Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BPO_RS06535 Genome accession   NZ_CP136426
Coordinates   1347764..1348390 (+) Length   208 a.a.
NCBI ID   WP_327983649.1    Uniprot ID   A0AAU0F1M4
Organism   Bergeyella porcorum strain QD2021     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342764..1353390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPO_RS06500 (BPO_1424) - 1343373..1343969 (-) 597 WP_327983644.1 superoxide dismutase -
  BPO_RS11625 rho 1344066..1345871 (-) 1806 Protein_1241 transcription termination factor Rho -
  BPO_RS06515 (BPO_1430) - 1346013..1346402 (+) 390 Protein_1242 DUF4293 domain-containing protein -
  BPO_RS06520 (BPO_1431) - 1346538..1346789 (+) 252 WP_327983647.1 hypothetical protein -
  BPO_RS06525 - 1346863..1347569 (+) 707 Protein_1244 ABC transporter transmembrane domain-containing protein -
  BPO_RS06530 (BPO_1434) - 1347557..1347751 (+) 195 WP_327983648.1 hypothetical protein -
  BPO_RS06535 (BPO_1435) rcrQ 1347764..1348390 (+) 627 WP_327983649.1 ABC transporter ATP-binding protein Regulator
  BPO_RS06540 (BPO_1437) - 1348623..1348919 (-) 297 WP_327983650.1 hypothetical protein -
  BPO_RS06545 (BPO_1440) - 1349286..1350356 (-) 1071 WP_327983651.1 hypothetical protein -
  BPO_RS06550 (BPO_1441) - 1350589..1350720 (-) 132 WP_327983652.1 hypothetical protein -
  BPO_RS06555 - 1350953..1351746 (-) 794 Protein_1250 DUF2797 domain-containing protein -
  BPO_RS06560 (BPO_1445) - 1351962..1352792 (+) 831 WP_327983653.1 GLPGLI family protein -
  BPO_RS06565 - 1352855..1353001 (-) 147 WP_327983654.1 hypothetical protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22979.32 Da        Isoelectric Point: 4.6956

>NTDB_id=890966 BPO_RS06535 WP_327983649.1 1347764..1348390(+) (rcrQ) [Bergeyella porcorum strain QD2021]
MGKTTIANLLTRFYDVSEGEILVDGVNIKELSLEQYRNLLGMVTQESVLFNDSVYNNILMGKPDASREEVISAAKIANAD
AFISQLPEGYDTTIGDDGNKLSGGQKQRVSIARAVLKNPPIMILDEATSALDTESERLVQLALENMMENRTSLIIAHRLS
TIQKADLIVVMERGNIVEQGTHQELLAQNGIYKKLGRFAELWIKSILG

Nucleotide


Download         Length: 627 bp        

>NTDB_id=890966 BPO_RS06535 WP_327983649.1 1347764..1348390(+) (rcrQ) [Bergeyella porcorum strain QD2021]
GTGGGTAAAACTACCATTGCCAATCTTCTTACCAGATTTTATGATGTTTCTGAAGGTGAAATCCTTGTAGATGGTGTGAA
TATCAAAGAACTTAGCCTAGAACAATACCGAAATCTTCTGGGAATGGTAACTCAAGAATCTGTTTTGTTCAATGATAGCG
TGTATAACAATATCCTGATGGGTAAACCTGATGCCAGCCGAGAAGAGGTTATCTCCGCTGCAAAAATAGCCAATGCAGAT
GCTTTTATTTCTCAACTTCCAGAGGGCTATGATACCACCATAGGAGATGATGGTAACAAACTATCAGGTGGACAGAAACA
ACGCGTTTCCATCGCAAGAGCTGTACTGAAAAATCCTCCGATAATGATTCTAGATGAGGCAACCTCTGCACTAGATACAG
AGTCTGAACGATTGGTGCAACTTGCCTTAGAAAATATGATGGAAAATAGAACATCTCTCATTATTGCTCATAGACTTTCC
ACCATACAAAAAGCAGATTTAATTGTAGTGATGGAACGCGGCAATATCGTAGAGCAAGGTACACATCAAGAATTATTAGC
CCAAAATGGGATCTATAAAAAACTGGGTAGATTTGCAGAACTTTGGATAAAAAGTATATTAGGGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(2-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.546

93.269

0.481
  comA/nlmT Streptococcus mutans UA159

42.051

93.75

0.394
  rcrP Streptococcus mutans UA159

39.899

95.192

0.38
  comA Streptococcus mitis SK321

39.286

94.231

0.37
  comA Streptococcus mitis NCTC 12261

38.776

94.231

0.365
  comA Streptococcus pneumoniae Rx1

38.265

94.231

0.361
  comA Streptococcus pneumoniae D39

38.265

94.231

0.361
  comA Streptococcus pneumoniae R6

38.265

94.231

0.361