Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   OCU74_RS09355 Genome accession   NZ_AP024883
Coordinates   2087464..2088069 (-) Length   201 a.a.
NCBI ID   WP_087479473.1    Uniprot ID   A0A1Y6ISG2
Organism   Vibrio mangrovi strain CECT 7927     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2082464..2093069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS09335 - 2082687..2083940 (-) 1254 WP_087479469.1 DUF945 family protein -
  OCU74_RS09340 - 2084156..2086108 (+) 1953 WP_087479470.1 ATP-binding protein -
  OCU74_RS09345 - 2086125..2086625 (+) 501 WP_087479471.1 response regulator -
  OCU74_RS09350 - 2086853..2087401 (+) 549 WP_087479472.1 hypothetical protein -
  OCU74_RS09355 tfoX 2087464..2088069 (-) 606 WP_087479473.1 TfoX/Sxy family DNA transformation protein Regulator
  OCU74_RS09360 - 2088391..2089311 (+) 921 WP_087480092.1 HDOD domain-containing protein -
  OCU74_RS09365 panP 2089466..2091142 (+) 1677 WP_087480093.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  OCU74_RS09370 - 2091447..2092301 (+) 855 WP_087479474.1 MurR/RpiR family transcriptional regulator -
  OCU74_RS09375 - 2092486..2092752 (+) 267 WP_087479475.1 GrxA family glutaredoxin -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23080.98 Da        Isoelectric Point: 9.3036

>NTDB_id=89077 OCU74_RS09355 WP_087479473.1 2087464..2088069(-) (tfoX) [Vibrio mangrovi strain CECT 7927]
MIATKFFDYLMERENFDTKSIFGDVGLFCQDAMFALVCANHIYIRGGGVLDEKLVSLNCSKYVFVKKQSISKVNYYDITE
LFRSGYPYLGDIISRAKALAICQKRQKYSLSNRRLRDLPNLHLTIERMLKKSGIPDVAAFFKLGATRAFLKVRQLYGATA
DVKLLWKFVGAIEEVHWKLIPEKRKQQVLNECCSLAEEEEG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=89077 OCU74_RS09355 WP_087479473.1 2087464..2088069(-) (tfoX) [Vibrio mangrovi strain CECT 7927]
ATGATAGCAACAAAATTTTTTGATTACTTAATGGAAAGAGAAAATTTTGACACTAAGTCAATATTTGGGGATGTAGGATT
ATTTTGTCAGGATGCCATGTTTGCTTTGGTCTGTGCGAATCATATTTATATCCGGGGCGGGGGTGTACTGGACGAGAAGC
TAGTATCGTTGAATTGCTCAAAGTATGTCTTTGTTAAAAAACAAAGTATTTCTAAAGTAAATTATTACGATATTACTGAA
TTGTTTCGATCCGGGTATCCGTATCTCGGAGATATCATCAGTCGTGCTAAAGCGTTGGCTATCTGTCAGAAAAGGCAGAA
ATATTCATTGTCGAATCGACGATTGAGAGATCTGCCCAATTTGCATCTGACCATAGAACGAATGTTGAAGAAATCGGGAA
TCCCCGATGTGGCCGCATTCTTTAAACTGGGAGCTACGAGAGCATTTCTGAAAGTCAGGCAATTATACGGTGCGACAGCC
GATGTTAAGCTGCTATGGAAATTTGTTGGGGCAATTGAAGAAGTTCACTGGAAATTAATTCCGGAGAAACGTAAGCAACA
GGTATTGAATGAGTGCTGCTCGCTTGCAGAAGAAGAGGAGGGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-80)

TfoX C-terminal domain (TfoX_C)

(112-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6ISG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

51.562

95.522

0.493
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

51.562

95.522

0.493
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

51.562

95.522

0.493
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

51.562

95.522

0.493
  tfoX Vibrio cholerae strain A1552

51.562

95.522

0.493
  tfoX Vibrio campbellii strain DS40M4

50.521

95.522

0.483
  tfoX Vibrio parahaemolyticus RIMD 2210633

50.521

95.522

0.483
  tfoX Aliivibrio fischeri ES114

45.55

95.025

0.433

Multiple sequence alignment