Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Pcarn_RS12185 Genome accession   NZ_AP024881
Coordinates   2648967..2649518 (-) Length   183 a.a.
NCBI ID   WP_261834125.1    Uniprot ID   -
Organism   Vibrio ishigakensis strain C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2643967..2654518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS12165 - 2644387..2644710 (-) 324 WP_261834121.1 MSHA biogenesis protein MshK -
  Pcarn_RS12170 - 2644703..2645344 (-) 642 WP_261834122.1 type II secretion system protein M -
  Pcarn_RS12175 - 2645341..2646783 (-) 1443 WP_261834123.1 hypothetical protein -
  Pcarn_RS12180 csrD 2646823..2648817 (-) 1995 WP_261834124.1 RNase E specificity factor CsrD -
  Pcarn_RS12185 ssb 2648967..2649518 (-) 552 WP_261834125.1 single-stranded DNA-binding protein Machinery gene
  Pcarn_RS12190 - 2649833..2650468 (+) 636 WP_261834126.1 response regulator transcription factor -
  Pcarn_RS12195 galU 2650576..2651448 (+) 873 WP_261834127.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Pcarn_RS12200 uvrA 2651562..2654393 (+) 2832 WP_261834128.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20168.22 Da        Isoelectric Point: 5.7627

>NTDB_id=89055 Pcarn_RS12185 WP_261834125.1 2648967..2649518(-) (ssb) [Vibrio ishigakensis strain C1]
MASRGVNKVIIMGNLGQDPEVRFAANGNAIANITIATSETWRDKASGEQREKTEWHRVVLFGKTAEIAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQWPTGQMQLLGGRQGGGAPGQQMGGQQGGYSQPQGQANSGWGQPQQPQVHQQPAQQ
QKPQAPQSNYNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=89055 Pcarn_RS12185 WP_261834125.1 2648967..2649518(-) (ssb) [Vibrio ishigakensis strain C1]
ATGGCAAGCCGTGGCGTCAACAAAGTTATTATAATGGGCAACCTAGGCCAAGATCCTGAGGTACGTTTTGCCGCTAATGG
TAATGCTATCGCGAACATTACTATCGCCACTTCTGAAACATGGCGAGACAAAGCAAGCGGTGAACAGCGTGAAAAAACTG
AATGGCACCGTGTGGTTCTATTCGGCAAAACAGCTGAAATCGCGGGCGAATACCTGAAGAAAGGCTCTCAGGTTTACATC
GAAGGTCAACTGCAGACTCGTAAGTGGCAAGACCAATCTGGTCAAGACCGCTACACCACAGAAGTTGTTGTTCAATGGCC
AACAGGTCAGATGCAACTGCTAGGTGGTCGTCAAGGCGGTGGTGCTCCAGGCCAACAGATGGGCGGTCAGCAAGGTGGTT
ACAGCCAGCCTCAAGGTCAAGCAAACTCTGGTTGGGGTCAACCTCAACAGCCGCAAGTGCATCAACAACCTGCGCAACAG
CAAAAACCTCAGGCTCCACAGTCTAACTACAATGAGCCACCAATGGATTTTGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.727
  ssb Glaesserella parasuis strain SC1401

53.439

100

0.552
  ssb Neisseria meningitidis MC58

43.956

99.454

0.437
  ssb Neisseria gonorrhoeae MS11

43.956

99.454

0.437

Multiple sequence alignment