Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RVY75_RS27010 Genome accession   NZ_CP136381
Coordinates   5305332..5305862 (-) Length   176 a.a.
NCBI ID   WP_002108911.1    Uniprot ID   -
Organism   Bacillus mycoides strain PAMC 29501     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5300332..5310862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY75_RS26990 (RVY75_26990) rplI 5301544..5301990 (-) 447 WP_002130186.1 50S ribosomal protein L9 -
  RVY75_RS26995 (RVY75_26995) - 5301987..5303960 (-) 1974 WP_002016460.1 DHH family phosphoesterase -
  RVY75_RS27000 (RVY75_27000) - 5304039..5304974 (-) 936 WP_002016461.1 YybS family protein -
  RVY75_RS27005 (RVY75_27005) rpsR 5305054..5305287 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  RVY75_RS27010 (RVY75_27010) ssbA 5305332..5305862 (-) 531 WP_002108911.1 single-stranded DNA-binding protein Machinery gene
  RVY75_RS27015 (RVY75_27015) rpsF 5305889..5306179 (-) 291 WP_001233782.1 30S ribosomal protein S6 -
  RVY75_RS27020 (RVY75_27020) ychF 5306371..5307471 (-) 1101 WP_002089951.1 redox-regulated ATPase YchF -
  RVY75_RS27025 (RVY75_27025) - 5307587..5307784 (-) 198 WP_000436054.1 DUF951 domain-containing protein -
  RVY75_RS27030 (RVY75_27030) - 5307805..5308662 (-) 858 WP_002016466.1 mechanosensitive ion channel family protein -
  RVY75_RS27035 (RVY75_27035) yyaC 5308923..5309519 (+) 597 WP_002089953.1 spore protease YyaC -
  RVY75_RS27040 (RVY75_27040) spo0J 5309540..5310391 (-) 852 WP_170935246.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19108.87 Da        Isoelectric Point: 4.9222

>NTDB_id=890478 RVY75_RS27010 WP_002108911.1 5305332..5305862(-) (ssbA) [Bacillus mycoides strain PAMC 29501]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNQGNSGFTKNDDPF
SNVGQPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=890478 RVY75_RS27010 WP_002108911.1 5305332..5305862(-) (ssbA) [Bacillus mycoides strain PAMC 29501]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGTAATCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTT
TCGAATGTTGGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.222

100

0.739
  ssb Latilactobacillus sakei subsp. sakei 23K

56.742

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.227

0.386
  ssb Glaesserella parasuis strain SC1401

36.612

100

0.381