Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Pcarn_RS06125 | Genome accession | NZ_AP024881 |
| Coordinates | 1350807..1351319 (+) | Length | 170 a.a. |
| NCBI ID | WP_261835498.1 | Uniprot ID | A0A0B8P5R5 |
| Organism | Vibrio ishigakensis strain C1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1345807..1356319
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Pcarn_RS06105 | - | 1346418..1346879 (+) | 462 | WP_261835494.1 | ATP-binding protein | - |
| Pcarn_RS06110 | - | 1347011..1348051 (+) | 1041 | WP_261835495.1 | TrkA family potassium uptake protein | - |
| Pcarn_RS06115 | - | 1348087..1349088 (-) | 1002 | WP_261835496.1 | YafY family protein | - |
| Pcarn_RS06120 | rmuC | 1349170..1350783 (+) | 1614 | WP_261835497.1 | DNA recombination protein RmuC | - |
| Pcarn_RS06125 | ssb | 1350807..1351319 (+) | 513 | WP_261835498.1 | single-stranded DNA-binding protein | Machinery gene |
| Pcarn_RS06130 | - | 1351473..1351811 (+) | 339 | WP_261835499.1 | GFA family protein | - |
| Pcarn_RS06135 | - | 1351868..1352113 (+) | 246 | WP_261835500.1 | Rho-binding antiterminator | - |
| Pcarn_RS06140 | - | 1352220..1353704 (-) | 1485 | WP_261835501.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18276.94 Da Isoelectric Point: 6.4730
>NTDB_id=89043 Pcarn_RS06125 WP_261835498.1 1350807..1351319(+) (ssb) [Vibrio ishigakensis strain C1]
MASRGVNKVILLGNLGNDPELRHFANGNAVANFTVATSEAWQDKASGQQREKTEWHRVSVMGRLAEVAGNYLKKGSQVYI
EGQLQTRKWQDKSGQERITTEIVVQGFNGTMQLLGGRGDGAQLGGSQSGGTYQGGGQQQSGGNQFGGNQNQQGGSQPYQP
SPDDYDDIPF
MASRGVNKVILLGNLGNDPELRHFANGNAVANFTVATSEAWQDKASGQQREKTEWHRVSVMGRLAEVAGNYLKKGSQVYI
EGQLQTRKWQDKSGQERITTEIVVQGFNGTMQLLGGRGDGAQLGGSQSGGTYQGGGQQQSGGNQFGGNQNQQGGSQPYQP
SPDDYDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=89043 Pcarn_RS06125 WP_261835498.1 1350807..1351319(+) (ssb) [Vibrio ishigakensis strain C1]
ATGGCATCACGAGGCGTAAACAAAGTTATTTTGCTCGGAAATCTAGGTAACGATCCTGAGCTTCGCCACTTCGCAAACGG
CAATGCGGTGGCAAACTTCACAGTGGCAACGTCTGAGGCCTGGCAAGACAAGGCAAGCGGTCAGCAACGAGAGAAAACCG
AGTGGCACCGCGTTTCAGTCATGGGACGCCTAGCTGAGGTTGCTGGCAACTATCTAAAGAAAGGCTCTCAGGTCTATATT
GAAGGACAATTGCAAACTCGAAAGTGGCAAGACAAAAGCGGTCAAGAGCGCATTACCACAGAGATCGTAGTACAAGGGTT
TAACGGCACTATGCAACTTCTTGGTGGGCGTGGCGATGGTGCTCAGCTGGGTGGCTCGCAGTCGGGTGGCACGTATCAAG
GCGGTGGCCAGCAACAGTCAGGCGGAAATCAATTTGGTGGTAATCAAAACCAGCAAGGTGGAAGTCAGCCTTATCAACCA
AGCCCAGATGATTATGATGATATCCCTTTCTAA
ATGGCATCACGAGGCGTAAACAAAGTTATTTTGCTCGGAAATCTAGGTAACGATCCTGAGCTTCGCCACTTCGCAAACGG
CAATGCGGTGGCAAACTTCACAGTGGCAACGTCTGAGGCCTGGCAAGACAAGGCAAGCGGTCAGCAACGAGAGAAAACCG
AGTGGCACCGCGTTTCAGTCATGGGACGCCTAGCTGAGGTTGCTGGCAACTATCTAAAGAAAGGCTCTCAGGTCTATATT
GAAGGACAATTGCAAACTCGAAAGTGGCAAGACAAAAGCGGTCAAGAGCGCATTACCACAGAGATCGTAGTACAAGGGTT
TAACGGCACTATGCAACTTCTTGGTGGGCGTGGCGATGGTGCTCAGCTGGGTGGCTCGCAGTCGGGTGGCACGTATCAAG
GCGGTGGCCAGCAACAGTCAGGCGGAAATCAATTTGGTGGTAATCAAAACCAGCAAGGTGGAAGTCAGCCTTATCAACCA
AGCCCAGATGATTATGATGATATCCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
62.222 |
100 |
0.659 |
| ssb | Glaesserella parasuis strain SC1401 |
49.451 |
100 |
0.529 |
| ssb | Neisseria meningitidis MC58 |
44.633 |
100 |
0.465 |
| ssb | Neisseria gonorrhoeae MS11 |
44.633 |
100 |
0.465 |