Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Pcarn_RS03645 Genome accession   NZ_AP024881
Coordinates   762103..762414 (+) Length   103 a.a.
NCBI ID   WP_390904466.1    Uniprot ID   -
Organism   Vibrio ishigakensis strain C1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 757103..767414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS03630 lon 757125..759473 (+) 2349 WP_261835032.1 endopeptidase La -
  Pcarn_RS03635 - 759662..759934 (+) 273 WP_261835033.1 HU family DNA-binding protein -
  Pcarn_RS03640 ppiD 760119..761975 (+) 1857 WP_261835034.1 peptidylprolyl isomerase -
  Pcarn_RS03645 comEA 762103..762414 (+) 312 WP_390904466.1 helix-hairpin-helix domain-containing protein Machinery gene
  Pcarn_RS03650 rrtA 762411..762950 (-) 540 WP_261835035.1 rhombosortase -
  Pcarn_RS03655 - 762958..763563 (+) 606 WP_261835036.1 tRNA-uridine aminocarboxypropyltransferase -
  Pcarn_RS03660 - 763570..764043 (-) 474 WP_261835037.1 hypothetical protein -
  Pcarn_RS03665 - 764120..765436 (-) 1317 WP_261835038.1 anti-phage deoxyguanosine triphosphatase -
  Pcarn_RS03670 yfbR 765449..766036 (-) 588 WP_261835039.1 5'-deoxynucleotidase -
  Pcarn_RS03675 - 766096..767310 (-) 1215 WP_261835040.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11254.00 Da        Isoelectric Point: 4.8723

>NTDB_id=89039 Pcarn_RS03645 WP_390904466.1 762103..762414(+) (comEA) [Vibrio ishigakensis strain C1]
MSRVIPTILTLLMMLSPTALLAAENSETIRDNGEYAGIEIRVNINTATSEELAAMLVGVGQKKAEHIVAFRELNGEFKSA
DDLKLVKGIGQATVDKNRERIEL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=89039 Pcarn_RS03645 WP_390904466.1 762103..762414(+) (comEA) [Vibrio ishigakensis strain C1]
ATGTCACGAGTCATTCCAACCATATTAACCCTGTTAATGATGCTATCCCCAACAGCCTTGCTGGCGGCTGAAAATAGTGA
GACTATCCGAGACAATGGCGAATATGCCGGGATAGAGATCAGAGTAAATATCAACACGGCTACCAGCGAAGAGCTAGCCG
CTATGCTAGTCGGCGTAGGTCAGAAGAAGGCCGAGCATATTGTAGCTTTTCGTGAGCTAAATGGTGAGTTTAAGAGTGCC
GATGATCTTAAGCTAGTCAAAGGCATTGGCCAGGCAACGGTAGATAAGAACCGAGAGCGTATTGAGCTTTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

52.577

94.175

0.495
  comEA Vibrio cholerae strain A1552

52.577

94.175

0.495
  comEA Vibrio parahaemolyticus RIMD 2210633

51.546

94.175

0.485
  comEA Vibrio campbellii strain DS40M4

49.485

94.175

0.466

Multiple sequence alignment