Detailed information NTG0890093

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: RXA29_RS01965
• Genome accession: NZ_CP136339
• Coordinates: 422103..422654 (+)
• Length: 183 a.a.
• NCBI ID: WP_316393238.1
• Uniprot ID: A0AAX4F022
• Organism: Dickeya solani strain CFBP5647
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	422103..437501	422103..422654	within	0

Gene organization within MGE regions

Location: 422103..437501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RXA29_RS01965 (RXA29_01965)	ssb	422103..422654 (+)	552	WP_316393238.1	single-stranded DNA-binding protein	Machinery gene
RXA29_RS01970 (RXA29_01970)	-	423016..423705 (+)	690	WP_316393239.1	hypothetical protein	-
RXA29_RS01975 (RXA29_01975)	-	423776..424354 (-)	579	WP_316393240.1	flavin reductase family protein	-
RXA29_RS01980 (RXA29_01980)	-	424388..424555 (-)	168	WP_316393241.1	hypothetical protein	-
RXA29_RS01985 (RXA29_01985)	-	424734..425222 (+)	489	WP_316393242.1	hypothetical protein	-
RXA29_RS01990 (RXA29_01990)	-	425485..426057 (+)	573	WP_316393243.1	DUF4255 domain-containing protein	-
RXA29_RS01995 (RXA29_01995)	-	426063..426860 (+)	798	WP_316393244.1	hypothetical protein	-
RXA29_RS02000 (RXA29_02000)	-	427005..428558 (+)	1554	WP_316393245.1	phage tail sheath C-terminal domain-containing protein	-
RXA29_RS02005 (RXA29_02005)	-	428610..429080 (+)	471	WP_022634799.1	phage tail protein	-
RXA29_RS02010 (RXA29_02010)	-	429167..429625 (+)	459	WP_316393246.1	phage tail protein	-
RXA29_RS02015 (RXA29_02015)	-	429646..429828 (+)	183	WP_057084178.1	hypothetical protein	-
RXA29_RS02020 (RXA29_02020)	-	429844..430491 (+)	648	WP_316393247.1	peptidoglycan-binding protein	-
RXA29_RS02025 (RXA29_02025)	vgrG	430503..432293 (+)	1791	WP_316393248.1	type VI secretion system tip protein VgrG	-
RXA29_RS02030 (RXA29_02030)	-	432659..432958 (+)	300	WP_316393249.1	PAAR domain-containing protein	-
RXA29_RS02035 (RXA29_02035)	-	432961..433380 (+)	420	WP_316393250.1	GPW/gp25 family protein	-
RXA29_RS02040 (RXA29_02040)	-	433377..437501 (+)	4125	WP_316393251.1	baseplate J/gp47 family protein	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 19721.70 Da
• Isoelectric Point: 4.9658

>NTDB_id=890093 RXA29_RS01965 WP_316393238.1 422103..422654(+) (ssb) [Dickeya solani strain CFBP5647]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGGMGNNAGGNTQQGGWGQPQQPQQENQFSGGGQPQS
RPQQSAPMPGNEPPMDFDDDIPF

Nucleotide

• Length: 552 bp

>NTDB_id=890093 RXA29_RS01965 WP_316393238.1 422103..422654(+) (ssb) [Dickeya solani strain CFBP5647]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGGGCGGCCAGGACCGCTACACCACCGAAGTGGTAGTCGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGCTCCGGCCGGTGGCGGCATGGGCAACAATGCGGGCGGCA
ATACGCAGCAAGGCGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGAGAACCAGTTCAGCGGTGGCGGTCAGCCCCAGTCC
CGTCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	74.054	100	0.749
ssb	Glaesserella parasuis strain SC1401	55.978	100	0.563
ssb	Neisseria meningitidis MC58	45.902	100	0.459
ssb	Neisseria gonorrhoeae MS11	45.902	100	0.459