Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RXV79_RS00545 Genome accession   NZ_CP136336
Coordinates   123613..124110 (+) Length   165 a.a.
NCBI ID   WP_316701330.1    Uniprot ID   -
Organism   Piscinibacter gummiphilus strain SBD 7-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 118613..129110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RXV79_RS00535 (RXV79_00535) recQ 119349..121226 (-) 1878 WP_316701328.1 DNA helicase RecQ -
  RXV79_RS00540 (RXV79_00540) - 121346..123526 (+) 2181 WP_316701329.1 prolyl oligopeptidase family serine peptidase -
  RXV79_RS00545 (RXV79_00545) ssb 123613..124110 (+) 498 WP_316701330.1 single-stranded DNA-binding protein Machinery gene
  RXV79_RS00550 (RXV79_00550) chrA 124194..125531 (+) 1338 WP_316701331.1 chromate efflux transporter -
  RXV79_RS00555 (RXV79_00555) - 125681..126280 (+) 600 WP_316701332.1 ATP-dependent Clp protease proteolytic subunit -
  RXV79_RS00560 (RXV79_00560) - 126386..126745 (+) 360 WP_316701333.1 DUF1428 domain-containing protein -
  RXV79_RS00565 (RXV79_00565) - 126866..127087 (+) 222 WP_316701335.1 hypothetical protein -
  RXV79_RS00570 (RXV79_00570) phnE 127131..127898 (-) 768 WP_316701337.1 phosphonate ABC transporter, permease protein PhnE -
  RXV79_RS00575 (RXV79_00575) phnE 127895..128722 (-) 828 WP_316701339.1 phosphonate ABC transporter, permease protein PhnE -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17820.78 Da        Isoelectric Point: 5.9909

>NTDB_id=890072 RXV79_RS00545 WP_316701330.1 123613..124110(+) (ssb) [Piscinibacter gummiphilus strain SBD 7-3]
MASINKVIIIGNLGKDPEVRYTPNGSAVCNITVATSRQWKDKNSGEKQEETEWHRIVFFDRMAEIAGEYLKKGRPVYVEG
RLKTRKWTDKDGVEKYTTEIMAENMQLLGGREGGGGGGGDEGGGGGYSRGSQGGGERSAPASRPAAKQAPKSSTGFDDMD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=890072 RXV79_RS00545 WP_316701330.1 123613..124110(+) (ssb) [Piscinibacter gummiphilus strain SBD 7-3]
ATGGCCTCGATCAACAAAGTCATCATCATCGGCAACCTGGGCAAGGACCCGGAAGTCCGCTACACGCCCAACGGCTCGGC
GGTGTGCAACATCACCGTGGCCACCTCCCGTCAGTGGAAAGACAAGAACTCCGGCGAAAAGCAGGAAGAGACCGAATGGC
ACCGCATCGTGTTCTTCGACCGCATGGCCGAGATCGCGGGTGAGTACCTGAAGAAGGGCCGCCCCGTCTACGTGGAAGGC
CGCCTGAAGACCCGCAAGTGGACCGACAAGGACGGCGTCGAGAAGTACACGACCGAAATCATGGCCGAGAACATGCAACT
GCTGGGTGGCCGTGAAGGCGGCGGCGGTGGTGGTGGCGACGAAGGCGGCGGCGGTGGCTACAGCCGCGGCTCGCAAGGCG
GTGGCGAGCGCAGCGCGCCGGCCTCGCGCCCGGCAGCCAAGCAGGCCCCGAAGTCGTCGACCGGCTTCGACGACATGGAC
GACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.543

100

0.564
  ssb Neisseria gonorrhoeae MS11

50

100

0.527
  ssb Vibrio cholerae strain A1552

48.588

100

0.521
  ssb Neisseria meningitidis MC58

48.851

100

0.515