Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RX793_RS17325 Genome accession   NZ_CP136263
Coordinates   3524623..3524958 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain 0039     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3519623..3529958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS17275 (RX793_17245) comGC 3519814..3520122 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  RX793_RS17280 (RX793_17250) comGD 3520112..3520549 (+) 438 WP_024085600.1 competence type IV pilus minor pilin ComGD Machinery gene
  RX793_RS17285 (RX793_17255) comGE 3520533..3520847 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  RX793_RS17290 (RX793_17260) comGF 3520861..3521256 (+) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  RX793_RS17295 (RX793_17265) comGG 3521257..3521634 (+) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  RX793_RS17300 (RX793_17270) - 3521691..3521870 (+) 180 WP_003153093.1 YqzE family protein -
  RX793_RS17305 (RX793_17275) - 3521910..3522239 (-) 330 WP_024085599.1 DUF3889 domain-containing protein -
  RX793_RS17310 (RX793_17280) tapA 3522499..3523170 (+) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  RX793_RS17315 (RX793_17285) sipW 3523142..3523726 (+) 585 WP_003153100.1 signal peptidase I SipW -
  RX793_RS17320 (RX793_17290) tasA 3523790..3524575 (+) 786 WP_015388008.1 biofilm matrix protein TasA -
  RX793_RS17325 (RX793_17295) sinR 3524623..3524958 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  RX793_RS17330 (RX793_17300) sinI 3524992..3525165 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  RX793_RS17335 (RX793_17305) - 3525342..3526136 (-) 795 WP_003153106.1 YqhG family protein -
  RX793_RS17340 (RX793_17310) - 3526154..3527824 (-) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  RX793_RS17345 (RX793_17315) gcvT 3528247..3529347 (+) 1101 WP_024085597.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=890016 RX793_RS17325 WP_003153104.1 3524623..3524958(-) (sinR) [Bacillus velezensis strain 0039]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=890016 RX793_RS17325 WP_003153104.1 3524623..3524958(-) (sinR) [Bacillus velezensis strain 0039]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991