Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RX793_RS17280 Genome accession   NZ_CP136263
Coordinates   3520112..3520549 (+) Length   145 a.a.
NCBI ID   WP_024085600.1    Uniprot ID   -
Organism   Bacillus velezensis strain 0039     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3515112..3525549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS17255 (RX793_17225) - 3515126..3516427 (-) 1302 WP_014305416.1 hemolysin family protein -
  RX793_RS17260 (RX793_17230) - 3516573..3517523 (+) 951 WP_014305415.1 magnesium transporter CorA family protein -
  RX793_RS17265 (RX793_17235) comGA 3517715..3518785 (+) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  RX793_RS17270 (RX793_17240) comGB 3518772..3519809 (+) 1038 WP_024085602.1 competence type IV pilus assembly protein ComGB Machinery gene
  RX793_RS17275 (RX793_17245) comGC 3519814..3520122 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  RX793_RS17280 (RX793_17250) comGD 3520112..3520549 (+) 438 WP_024085600.1 competence type IV pilus minor pilin ComGD Machinery gene
  RX793_RS17285 (RX793_17255) comGE 3520533..3520847 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  RX793_RS17290 (RX793_17260) comGF 3520861..3521256 (+) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  RX793_RS17295 (RX793_17265) comGG 3521257..3521634 (+) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  RX793_RS17300 (RX793_17270) - 3521691..3521870 (+) 180 WP_003153093.1 YqzE family protein -
  RX793_RS17305 (RX793_17275) - 3521910..3522239 (-) 330 WP_024085599.1 DUF3889 domain-containing protein -
  RX793_RS17310 (RX793_17280) tapA 3522499..3523170 (+) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  RX793_RS17315 (RX793_17285) sipW 3523142..3523726 (+) 585 WP_003153100.1 signal peptidase I SipW -
  RX793_RS17320 (RX793_17290) tasA 3523790..3524575 (+) 786 WP_015388008.1 biofilm matrix protein TasA -
  RX793_RS17325 (RX793_17295) sinR 3524623..3524958 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  RX793_RS17330 (RX793_17300) sinI 3524992..3525165 (-) 174 WP_003153105.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16302.80 Da        Isoelectric Point: 10.3354

>NTDB_id=890013 RX793_RS17280 WP_024085600.1 3520112..3520549(+) (comGD) [Bacillus velezensis strain 0039]
MNNNRRTENGFTLLESLVVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSFHITLVTLPESLEFNEKGHPNSGGKIRLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=890013 RX793_RS17280 WP_024085600.1 3520112..3520549(+) (comGD) [Bacillus velezensis strain 0039]
TTGAACAATAACAGGCGGACAGAAAACGGGTTTACCCTTCTTGAAAGCCTGGTTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTTCAAAAAGATA
TTCAGCTTGCGCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGTAGGATTGTCGAGCGTTCTTTTGATTCATTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCGATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

55.479

100

0.559