Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU28_RS10255 Genome accession   NZ_AP024871
Coordinates   2195011..2195556 (-) Length   181 a.a.
NCBI ID   WP_261816095.1    Uniprot ID   -
Organism   Vibrio gallicus strain CIP 107863     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2190011..2200556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU28_RS10235 - 2190425..2190748 (-) 324 WP_261816091.1 MSHA biogenesis protein MshK -
  OCU28_RS10240 - 2190741..2191382 (-) 642 WP_261816092.1 type II secretion system protein M -
  OCU28_RS10245 - 2191379..2192821 (-) 1443 WP_261816093.1 PilN domain-containing protein -
  OCU28_RS10250 csrD 2192865..2194865 (-) 2001 WP_261816094.1 RNase E specificity factor CsrD -
  OCU28_RS10255 ssb 2195011..2195556 (-) 546 WP_261816095.1 single-stranded DNA-binding protein Machinery gene
  OCU28_RS10260 - 2195848..2196483 (+) 636 WP_261816096.1 helix-turn-helix transcriptional regulator -
  OCU28_RS10265 galU 2196588..2197460 (+) 873 WP_261816097.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU28_RS10270 uvrA 2197575..2200406 (+) 2832 WP_261816098.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19991.01 Da        Isoelectric Point: 5.2358

>NTDB_id=88966 OCU28_RS10255 WP_261816095.1 2195011..2195556(-) (ssb) [Vibrio gallicus strain CIP 107863]
MASRGVNKVILVGALGQDPEVRFMPNGNAVANISIATSETWRDKSTGEQREKTEWHRVAIFGKTAEIAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGTMQMLGARQGQGGQAPVQNQGGQYNAPQGGQQQPNQGWGQPQQPQVQQQAK
PQAPQSNYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=88966 OCU28_RS10255 WP_261816095.1 2195011..2195556(-) (ssb) [Vibrio gallicus strain CIP 107863]
ATGGCAAGCCGTGGAGTAAATAAAGTAATTTTAGTTGGAGCTTTAGGGCAAGATCCTGAGGTCCGTTTTATGCCAAATGG
TAATGCTGTAGCAAATATTTCAATTGCAACTTCTGAAACTTGGCGTGATAAAAGCACTGGCGAACAACGCGAAAAAACAG
AATGGCATCGTGTAGCTATTTTTGGCAAAACGGCAGAGATTGCAGGTGAGTACCTTAAGAAAGGCTCACAAGTATATATT
GAAGGTCAACTACAAACGCGTAAATGGCAAGACCAATCAGGTCAAGACCGTTATACAACTGAAGTTGTAGTTCAAGGCTT
TAACGGCACTATGCAAATGCTTGGTGCGCGCCAAGGTCAAGGTGGTCAAGCGCCTGTTCAAAATCAAGGTGGTCAGTACA
ACGCACCTCAAGGCGGTCAGCAGCAACCTAACCAAGGTTGGGGACAGCCACAACAACCTCAAGTACAACAACAAGCAAAA
CCACAGGCTCCTCAGTCTAATTACAATGAGCCTCCGATGGATTTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.745

100

0.735
  ssb Glaesserella parasuis strain SC1401

54.255

100

0.564
  ssb Neisseria meningitidis MC58

46.995

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.47

Multiple sequence alignment