Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RWA07_RS04795 | Genome accession | NZ_CP136183 |
| Coordinates | 998201..998527 (+) | Length | 108 a.a. |
| NCBI ID | WP_049590695.1 | Uniprot ID | A0A429LH11 |
| Organism | Acinetobacter baumannii strain ABO21-A001 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 976356..1012908 | 998201..998527 | within | 0 |
Gene organization within MGE regions
Location: 976356..1012908
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RWA07_RS04690 (RWA07_04690) | - | 976356..977498 (+) | 1143 | WP_317857623.1 | tyrosine-type recombinase/integrase | - |
| RWA07_RS04695 (RWA07_04695) | - | 977695..979995 (+) | 2301 | WP_317857559.1 | hypothetical protein | - |
| RWA07_RS04700 (RWA07_04700) | - | 980020..981228 (-) | 1209 | WP_000343018.1 | IS256-like element ISAba26 family transposase | - |
| RWA07_RS04705 (RWA07_04705) | - | 981623..982075 (+) | 453 | WP_412095914.1 | hypothetical protein | - |
| RWA07_RS04715 (RWA07_04715) | - | 983346..983882 (+) | 537 | Protein_904 | inovirus-type Gp2 protein | - |
| RWA07_RS04720 (RWA07_04720) | - | 984028..985247 (+) | 1220 | WP_087486619.1 | IS3-like element ISAba19 family transposase | - |
| RWA07_RS04725 (RWA07_04725) | - | 985249..985872 (-) | 624 | WP_317857560.1 | hypothetical protein | - |
| RWA07_RS04730 (RWA07_04730) | - | 985931..987144 (+) | 1214 | Protein_907 | IS3 family transposase | - |
| RWA07_RS04735 (RWA07_04735) | - | 987396..988580 (+) | 1185 | WP_140975485.1 | hypothetical protein | - |
| RWA07_RS04740 (RWA07_04740) | - | 988623..989042 (-) | 420 | WP_317857561.1 | hypothetical protein | - |
| RWA07_RS04745 (RWA07_04745) | - | 989239..989523 (+) | 285 | WP_317857562.1 | hypothetical protein | - |
| RWA07_RS04750 (RWA07_04750) | - | 989554..990588 (+) | 1035 | WP_317857563.1 | DUF932 domain-containing protein | - |
| RWA07_RS04755 (RWA07_04755) | - | 990721..991779 (+) | 1059 | WP_317857564.1 | lambda-exonuclease family protein | - |
| RWA07_RS04760 (RWA07_04760) | - | 991952..992353 (+) | 402 | Protein_913 | hydrolase or metal-binding protein | - |
| RWA07_RS04765 (RWA07_04765) | - | 992403..993622 (+) | 1220 | WP_087486619.1 | IS3-like element ISAba19 family transposase | - |
| RWA07_RS04770 (RWA07_04770) | - | 993663..994145 (+) | 483 | Protein_915 | hydrolase or metal-binding protein | - |
| RWA07_RS04775 (RWA07_04775) | - | 994235..994465 (+) | 231 | WP_064479893.1 | helix-turn-helix transcriptional regulator | - |
| RWA07_RS04780 (RWA07_04780) | - | 994539..994724 (+) | 186 | Protein_917 | SAM-dependent methyltransferase | - |
| RWA07_RS04790 (RWA07_04790) | - | 996029..997867 (+) | 1839 | WP_317857565.1 | DUF927 domain-containing protein | - |
| RWA07_RS04795 (RWA07_04795) | ssb | 998201..998527 (+) | 327 | WP_049590695.1 | single-stranded DNA-binding protein | Machinery gene |
| RWA07_RS04800 (RWA07_04800) | - | 998767..999441 (+) | 675 | WP_000560651.1 | DUF3800 domain-containing protein | - |
| RWA07_RS04805 (RWA07_04805) | - | 999441..999629 (+) | 189 | WP_000642900.1 | hypothetical protein | - |
| RWA07_RS04810 (RWA07_04810) | - | 999685..1000350 (+) | 666 | WP_000515965.1 | hypothetical protein | - |
| RWA07_RS04820 (RWA07_04820) | - | 1001324..1002370 (+) | 1047 | WP_049590694.1 | nucleoid-associated protein | - |
| RWA07_RS04825 (RWA07_04825) | - | 1002373..1003578 (+) | 1206 | WP_032047075.1 | hypothetical protein | - |
| RWA07_RS04830 (RWA07_04830) | - | 1007908..1008840 (-) | 933 | Protein_926 | IS5 family transposase | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 12175.78 Da Isoelectric Point: 10.3140
>NTDB_id=889655 RWA07_RS04795 WP_049590695.1 998201..998527(+) (ssb) [Acinetobacter baumannii strain ABO21-A001]
MPNVNKVILMGVLGRDPETKQFPNGGSITTFSLATSEHWKDKTTNERKEATEWHRISTNGRLADVASKYLKKGSKAYIEG
SLRTRKWKDQSGADREATEIRADVLQLL
MPNVNKVILMGVLGRDPETKQFPNGGSITTFSLATSEHWKDKTTNERKEATEWHRISTNGRLADVASKYLKKGSKAYIEG
SLRTRKWKDQSGADREATEIRADVLQLL
Nucleotide
Download Length: 327 bp
>NTDB_id=889655 RWA07_RS04795 WP_049590695.1 998201..998527(+) (ssb) [Acinetobacter baumannii strain ABO21-A001]
ATGCCAAACGTGAACAAAGTAATTTTAATGGGTGTGCTAGGTCGTGACCCTGAAACAAAACAATTTCCCAATGGTGGAAG
CATTACCACATTCAGCCTTGCTACATCGGAGCATTGGAAAGACAAGACCACCAATGAGCGTAAAGAGGCTACAGAGTGGC
ACAGAATCAGCACCAATGGACGTTTAGCGGATGTTGCCAGTAAGTACCTCAAGAAAGGCAGTAAGGCATATATTGAGGGC
AGTTTAAGAACAAGAAAATGGAAAGATCAAAGCGGTGCAGATCGAGAGGCAACAGAGATTAGGGCGGATGTGTTGCAGTT
GCTTTGA
ATGCCAAACGTGAACAAAGTAATTTTAATGGGTGTGCTAGGTCGTGACCCTGAAACAAAACAATTTCCCAATGGTGGAAG
CATTACCACATTCAGCCTTGCTACATCGGAGCATTGGAAAGACAAGACCACCAATGAGCGTAAAGAGGCTACAGAGTGGC
ACAGAATCAGCACCAATGGACGTTTAGCGGATGTTGCCAGTAAGTACCTCAAGAAAGGCAGTAAGGCATATATTGAGGGC
AGTTTAAGAACAAGAAAATGGAAAGATCAAAGCGGTGCAGATCGAGAGGCAACAGAGATTAGGGCGGATGTGTTGCAGTT
GCTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
59.259 |
100 |
0.593 |
| ssb | Vibrio cholerae strain A1552 |
55.046 |
100 |
0.556 |
| ssb | Neisseria meningitidis MC58 |
46.226 |
98.148 |
0.454 |
| ssb | Neisseria gonorrhoeae MS11 |
46.226 |
98.148 |
0.454 |