Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU28_RS05475 Genome accession   NZ_AP024871
Coordinates   1176940..1177440 (+) Length   166 a.a.
NCBI ID   WP_261817321.1    Uniprot ID   -
Organism   Vibrio gallicus strain CIP 107863     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1171940..1182440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU28_RS05455 - 1172554..1172745 (+) 192 WP_261817318.1 YwbE family protein -
  OCU28_RS05460 - 1172855..1174216 (+) 1362 WP_390623800.1 MATE family efflux transporter -
  OCU28_RS05465 - 1174226..1175236 (-) 1011 WP_261817319.1 YafY family protein -
  OCU28_RS05470 rmuC 1175318..1176958 (+) 1641 WP_261817320.1 DNA recombination protein RmuC -
  OCU28_RS05475 ssb 1176940..1177440 (+) 501 WP_261817321.1 single-stranded DNA-binding protein Machinery gene
  OCU28_RS05480 - 1177680..1179053 (-) 1374 WP_261817322.1 NCS2 family permease -
  OCU28_RS05485 - 1179589..1180284 (+) 696 WP_261817323.1 pirin family protein -
  OCU28_RS05490 - 1180400..1181272 (-) 873 WP_261817324.1 DMT family transporter -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18306.03 Da        Isoelectric Point: 6.4741

>NTDB_id=88954 OCU28_RS05475 WP_261817321.1 1176940..1177440(+) (ssb) [Vibrio gallicus strain CIP 107863]
MASRGVNKVILLGNLGNDPEVRHFSNGNAVANFTVATSETWQDKATGQQREKTEWHRVSVMGKLAEIAGNYLKKGSQVYV
EGQLQTRKWQDKSGQERYTTEIVVQGFNGTMQLLGARGETSNMQSTPPQSTAQSSGSQPNAFQGSVQNSSTNQQNYQPDD
YDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=88954 OCU28_RS05475 WP_261817321.1 1176940..1177440(+) (ssb) [Vibrio gallicus strain CIP 107863]
ATGGCATCACGAGGAGTAAATAAGGTTATTTTACTAGGAAACCTTGGTAACGACCCAGAGGTAAGGCATTTTTCAAACGG
CAATGCAGTTGCCAATTTTACGGTTGCAACATCCGAGACTTGGCAAGACAAAGCCACGGGTCAACAGAGAGAAAAAACGG
AGTGGCATCGAGTTTCTGTTATGGGAAAACTGGCTGAAATAGCGGGAAACTACCTTAAAAAGGGCTCACAAGTGTATGTA
GAAGGGCAACTTCAAACTCGAAAGTGGCAAGATAAAAGCGGACAAGAGCGTTACACCACCGAGATTGTGGTACAAGGCTT
CAATGGCACTATGCAATTATTAGGCGCTCGAGGCGAGACAAGCAATATGCAATCCACACCACCACAGTCGACAGCTCAAT
CGTCGGGATCGCAGCCTAACGCCTTTCAGGGTAGCGTGCAGAACTCATCGACAAACCAGCAAAACTATCAACCCGATGAC
TACGATGATATACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60.452

100

0.645
  ssb Glaesserella parasuis strain SC1401

51.572

95.783

0.494
  ssb Neisseria gonorrhoeae MS11

56.897

69.88

0.398
  ssb Neisseria meningitidis MC58

56.897

69.88

0.398

Multiple sequence alignment