Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCU46_RS10250 Genome accession   NZ_AP024866
Coordinates   2237455..2237760 (-) Length   101 a.a.
NCBI ID   WP_141272500.1    Uniprot ID   -
Organism   Vibrio comitans strain LMG 23416     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2232455..2242760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS10225 - 2232964..2234178 (+) 1215 WP_141272508.1 pyridoxal phosphate-dependent aminotransferase -
  OCU46_RS10230 yfbR 2234338..2234925 (+) 588 WP_141272506.1 5'-deoxynucleotidase -
  OCU46_RS10235 - 2234948..2236261 (+) 1314 WP_141272504.1 anti-phage deoxyguanosine triphosphatase -
  OCU46_RS10240 - 2236271..2236885 (-) 615 WP_141272502.1 tRNA-uridine aminocarboxypropyltransferase -
  OCU46_RS10245 rrtA 2236892..2237428 (+) 537 WP_244311444.1 rhombosortase -
  OCU46_RS10250 comEA 2237455..2237760 (-) 306 WP_141272500.1 ComEA family DNA-binding protein Machinery gene
  OCU46_RS10255 ppiD 2237907..2239763 (-) 1857 WP_141272498.1 peptidylprolyl isomerase -
  OCU46_RS10260 - 2239923..2240195 (-) 273 WP_017027464.1 HU family DNA-binding protein -
  OCU46_RS10265 lon 2240391..2242736 (-) 2346 WP_141272496.1 endopeptidase La -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11228.12 Da        Isoelectric Point: 7.2018

>NTDB_id=88931 OCU46_RS10250 WP_141272500.1 2237455..2237760(-) (comEA) [Vibrio comitans strain LMG 23416]
MGLSMIKRLWLITVLMLVPVMGYAADQMKGDKYEGIEIEVNINTASSDELATLLLGVGETKAKQIVAYREVHGEFKHADE
LQQVKGIGQATVDKNRARIRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=88931 OCU46_RS10250 WP_141272500.1 2237455..2237760(-) (comEA) [Vibrio comitans strain LMG 23416]
ATGGGACTATCAATGATTAAACGTTTATGGCTTATTACGGTTTTAATGCTAGTACCGGTTATGGGGTATGCAGCAGACCA
AATGAAGGGCGATAAATACGAAGGTATTGAGATTGAAGTCAATATCAATACTGCCTCTAGCGATGAGCTTGCGACACTGT
TGCTTGGGGTAGGAGAAACCAAGGCAAAGCAAATCGTGGCCTATCGCGAGGTTCATGGTGAGTTTAAGCATGCGGATGAA
CTGCAGCAAGTGAAAGGAATAGGGCAGGCGACGGTAGACAAAAATCGAGCCCGTATCCGATTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(39-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

56.989

92.079

0.525
  comEA Vibrio campbellii strain DS40M4

54.839

92.079

0.505
  comEA Vibrio cholerae C6706

51.546

96.04

0.495
  comEA Vibrio cholerae strain A1552

51.546

96.04

0.495

Multiple sequence alignment