Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU46_RS07260 Genome accession   NZ_AP024866
Coordinates   1599979..1600482 (-) Length   167 a.a.
NCBI ID   WP_141271392.1    Uniprot ID   -
Organism   Vibrio comitans strain LMG 23416     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1594979..1605482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS07240 - 1595523..1596212 (+) 690 WP_141271389.1 hypothetical protein -
  OCU46_RS07245 - 1596329..1597972 (+) 1644 WP_141271390.1 SgrR family transcriptional regulator -
  OCU46_RS07250 - 1598024..1599100 (+) 1077 WP_141271391.1 threonine aldolase family protein -
  OCU46_RS07255 - 1599169..1599750 (-) 582 WP_244311404.1 SH3 domain-containing protein -
  OCU46_RS07260 ssb 1599979..1600482 (-) 504 WP_141271392.1 single-stranded DNA-binding protein Machinery gene
  OCU46_RS07265 rmuC 1600584..1602185 (-) 1602 WP_141271393.1 DNA recombination protein RmuC -
  OCU46_RS07270 - 1602415..1603419 (+) 1005 WP_141271394.1 helix-turn-helix transcriptional regulator -
  OCU46_RS07275 - 1603420..1604430 (-) 1011 WP_141271395.1 adenosine deaminase -
  OCU46_RS07280 - 1604449..1604871 (-) 423 WP_141271396.1 ATP-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18522.15 Da        Isoelectric Point: 6.4874

>NTDB_id=88927 OCU46_RS07260 WP_141271392.1 1599979..1600482(-) (ssb) [Vibrio comitans strain LMG 23416]
MASRGVNKVIIVGNLGTDPELRHFSNGNAVANFTVATSETWQDKSTGQQREKTEWHRISVMGKLAEIAGNHLRKGSQVYI
EGQLQTRKWQDKSGQERYTTEVVVQGFNGTMQMLGGRQQGEQSHQDNQYGGGANQGNQFNQGNAPSSQTTSQDRFTPSPD
DYDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=88927 OCU46_RS07260 WP_141271392.1 1599979..1600482(-) (ssb) [Vibrio comitans strain LMG 23416]
ATGGCATCACGCGGCGTAAACAAAGTAATCATCGTGGGTAACTTAGGTACCGATCCTGAGTTACGTCACTTCTCAAACGG
TAATGCAGTAGCCAATTTTACGGTAGCAACATCAGAAACTTGGCAAGATAAATCAACAGGCCAACAAAGAGAAAAGACCG
AATGGCATCGTATTTCTGTTATGGGGAAGCTTGCCGAAATTGCGGGTAATCACCTTCGTAAGGGCTCTCAAGTGTATATC
GAAGGCCAATTGCAGACACGTAAATGGCAAGATAAGTCGGGTCAAGAGCGTTACACCACTGAGGTGGTTGTTCAGGGTTT
TAACGGCACGATGCAAATGCTAGGCGGTCGTCAGCAAGGCGAGCAAAGCCATCAAGATAATCAATATGGCGGTGGTGCTA
ATCAAGGAAATCAGTTTAACCAGGGCAATGCACCGTCAAGTCAAACTACCTCACAGGATAGGTTTACACCAAGCCCAGAT
GACTACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60.44

100

0.659
  ssb Glaesserella parasuis strain SC1401

50

100

0.551
  ssb Neisseria meningitidis MC58

44.944

100

0.479
  ssb Neisseria gonorrhoeae MS11

46.452

92.814

0.431

Multiple sequence alignment