Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OCU46_RS01395 | Genome accession | NZ_AP024866 |
| Coordinates | 289700..290254 (+) | Length | 184 a.a. |
| NCBI ID | WP_141272995.1 | Uniprot ID | A0A4Y3IT57 |
| Organism | Vibrio comitans strain LMG 23416 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 284700..295254
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCU46_RS01380 | uvrA | 284839..287664 (-) | 2826 | WP_141272989.1 | excinuclease ABC subunit UvrA | - |
| OCU46_RS01385 | galU | 287792..288670 (-) | 879 | WP_141272991.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| OCU46_RS01390 | - | 288778..289413 (-) | 636 | WP_141272993.1 | response regulator transcription factor | - |
| OCU46_RS01395 | ssb | 289700..290254 (+) | 555 | WP_141272995.1 | single-stranded DNA-binding protein | Machinery gene |
| OCU46_RS01400 | csrD | 290414..292423 (+) | 2010 | WP_141272997.1 | RNase E specificity factor CsrD | - |
| OCU46_RS01405 | - | 292558..293913 (+) | 1356 | WP_244311459.1 | hypothetical protein | - |
| OCU46_RS01410 | - | 293913..294554 (+) | 642 | WP_141273000.1 | MSHA biogenesis protein MshJ | - |
| OCU46_RS01415 | - | 294547..294873 (+) | 327 | WP_141273002.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20474.53 Da Isoelectric Point: 5.7627
>NTDB_id=88915 OCU46_RS01395 WP_141272995.1 289700..290254(+) (ssb) [Vibrio comitans strain LMG 23416]
MASRGVNKVIIMGNLGQDPEVRFAANGNAIANITIATSETWRDKANGEQREKTEWHRVVLFGKTAEIAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQWPTGQMQLLGSRQGGQAPAQSQGGQYGAPQGGQQQQGGWGQPQQPQVHQPAQQQQ
QQKPQQAPQQYNEPPMDFDDDIPF
MASRGVNKVIIMGNLGQDPEVRFAANGNAIANITIATSETWRDKANGEQREKTEWHRVVLFGKTAEIAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQWPTGQMQLLGSRQGGQAPAQSQGGQYGAPQGGQQQQGGWGQPQQPQVHQPAQQQQ
QQKPQQAPQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=88915 OCU46_RS01395 WP_141272995.1 289700..290254(+) (ssb) [Vibrio comitans strain LMG 23416]
ATGGCTAGCCGTGGCGTCAACAAAGTAATTATTATGGGTAACTTAGGACAAGATCCTGAGGTTCGTTTCGCCGCAAATGG
CAATGCAATTGCAAACATTACAATTGCTACCTCTGAAACTTGGCGAGATAAAGCCAATGGCGAGCAACGCGAGAAAACAG
AATGGCACCGTGTTGTTCTGTTTGGTAAGACTGCTGAAATTGCAGGTGAGTACCTTAAAAAGGGTTCACAAGTTTACATT
GAAGGCCAACTACAAACTCGTAAGTGGCAAGATCAATCAGGTCAAGACCGTTACACAACTGAAGTTGTAGTTCAATGGCC
TACAGGTCAGATGCAACTGCTAGGTTCTCGCCAAGGTGGTCAAGCTCCGGCACAAAGCCAAGGCGGCCAATACGGCGCAC
CTCAAGGTGGCCAGCAGCAGCAAGGTGGTTGGGGTCAACCTCAACAACCTCAGGTTCATCAGCCAGCTCAACAGCAACAG
CAGCAGAAGCCACAACAGGCTCCTCAACAGTACAATGAGCCACCAATGGATTTTGACGACGACATTCCGTTCTAA
ATGGCTAGCCGTGGCGTCAACAAAGTAATTATTATGGGTAACTTAGGACAAGATCCTGAGGTTCGTTTCGCCGCAAATGG
CAATGCAATTGCAAACATTACAATTGCTACCTCTGAAACTTGGCGAGATAAAGCCAATGGCGAGCAACGCGAGAAAACAG
AATGGCACCGTGTTGTTCTGTTTGGTAAGACTGCTGAAATTGCAGGTGAGTACCTTAAAAAGGGTTCACAAGTTTACATT
GAAGGCCAACTACAAACTCGTAAGTGGCAAGATCAATCAGGTCAAGACCGTTACACAACTGAAGTTGTAGTTCAATGGCC
TACAGGTCAGATGCAACTGCTAGGTTCTCGCCAAGGTGGTCAAGCTCCGGCACAAAGCCAAGGCGGCCAATACGGCGCAC
CTCAAGGTGGCCAGCAGCAGCAAGGTGGTTGGGGTCAACCTCAACAACCTCAGGTTCATCAGCCAGCTCAACAGCAACAG
CAGCAGAAGCCACAACAGGCTCCTCAACAGTACAATGAGCCACCAATGGATTTTGACGACGACATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
72.727 |
100 |
0.739 |
| ssb | Glaesserella parasuis strain SC1401 |
50.549 |
98.913 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
43.784 |
100 |
0.44 |
| ssb | Neisseria gonorrhoeae MS11 |
43.784 |
100 |
0.44 |