Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F6I35_RS09490 Genome accession   NZ_CP136160
Coordinates   1796506..1796997 (-) Length   163 a.a.
NCBI ID   WP_003026323.1    Uniprot ID   I0SA12
Organism   Streptococcus anginosus strain UMB8616     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1791506..1801997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I35_RS09475 (F6I35_0009470) - 1794413..1795357 (+) 945 WP_003030529.1 magnesium transporter CorA family protein -
  F6I35_RS09480 (F6I35_0009475) - 1795373..1796050 (+) 678 WP_024052425.1 DUF1129 domain-containing protein -
  F6I35_RS09485 (F6I35_0009480) rpsR 1796230..1796469 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  F6I35_RS09490 (F6I35_0009485) ssb 1796506..1796997 (-) 492 WP_003026323.1 single-stranded DNA-binding protein Machinery gene
  F6I35_RS09495 (F6I35_0009490) rpsF 1797009..1797299 (-) 291 WP_003026325.1 30S ribosomal protein S6 -
  F6I35_RS09500 (F6I35_0009495) - 1797567..1798609 (+) 1043 Protein_1830 GtrA family protein -
  F6I35_RS09505 (F6I35_0009500) - 1798606..1799511 (+) 906 WP_024052428.1 phosphodiester glycosidase family protein -
  F6I35_RS09510 (F6I35_0009505) - 1799486..1799905 (+) 420 Protein_1832 hypothetical protein -
  F6I35_RS09515 (F6I35_0009510) - 1800132..1800734 (-) 603 WP_024052430.1 histidine phosphatase family protein -
  F6I35_RS09520 (F6I35_0009515) - 1800735..1801328 (-) 594 WP_070815206.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18203.89 Da        Isoelectric Point: 4.9008

>NTDB_id=888983 F6I35_RS09490 WP_003026323.1 1796506..1796997(-) (ssb) [Streptococcus anginosus strain UMB8616]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYTSNNFGNSSSNFGNSTSANQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=888983 F6I35_RS09490 WP_003026323.1 1796506..1796997(-) (ssb) [Streptococcus anginosus strain UMB8616]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACTCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTCATTAACGTTGTAATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTCATCGGAATTACTGGTCGGATTCAGACACGT
AACTACGAAAACCAGCAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCTGACAATTTCCAACTGCTAGAAAGTCGTGC
CAGCCGTGAGGGTCAATCTTCTGGTGGCTACACTTCTAATAATTTCGGAAATTCATCATCCAACTTTGGGAACTCAACTT
CTGCCAATCAAGTACCCAACTTTTCTCGTGATGAAAATCCATTTGGTAATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SA12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.386

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368