Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU35_RS06885 Genome accession   NZ_AP024864
Coordinates   1476709..1477233 (-) Length   174 a.a.
NCBI ID   WP_017027244.1    Uniprot ID   -
Organism   Vibrio breoganii strain CAIM 1829     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1471709..1482233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU35_RS06865 sbcD 1472356..1473582 (-) 1227 WP_261825047.1 exonuclease subunit SbcD -
  OCU35_RS06870 - 1474352..1474576 (+) 225 WP_017027247.1 SgrR family transcriptional regulator -
  OCU35_RS06875 - 1474646..1475722 (+) 1077 WP_102429415.1 low specificity L-threonine aldolase -
  OCU35_RS06880 - 1475848..1476438 (-) 591 WP_261825048.1 SH3 domain-containing protein -
  OCU35_RS06885 ssb 1476709..1477233 (-) 525 WP_017027244.1 single-stranded DNA-binding protein Machinery gene
  OCU35_RS06890 rmuC 1477332..1478933 (-) 1602 WP_017027243.1 DNA recombination protein RmuC -
  OCU35_RS06895 - 1478946..1479296 (-) 351 WP_017030686.1 hypothetical protein -
  OCU35_RS06900 - 1479406..1480410 (+) 1005 WP_261825049.1 YafY family protein -
  OCU35_RS06905 - 1480411..1481421 (-) 1011 WP_261825050.1 adenosine deaminase -
  OCU35_RS06910 - 1481440..1481862 (-) 423 WP_261825051.1 ATP-binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18573.28 Da        Isoelectric Point: 6.7282

>NTDB_id=88897 OCU35_RS06885 WP_017027244.1 1476709..1477233(-) (ssb) [Vibrio breoganii strain CAIM 1829]
MASRGVNKVIIVGNLGTDPELRHFSNGNAVANFTVATSETWQDKATGQQREKTEWHRISVMGKLAEIAGNHLRKGSQVYI
EGQLQTRKWQDKSGQERYTTEVVVQGFNGTMQMLGGRQQGEQSSPGNQYAGAGGSNQGQFGAGNASANAPTNPGQSGAPG
GFTPSPDDYDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=88897 OCU35_RS06885 WP_017027244.1 1476709..1477233(-) (ssb) [Vibrio breoganii strain CAIM 1829]
ATGGCATCACGCGGCGTAAACAAAGTCATCATCGTAGGAAATTTAGGCACTGACCCTGAACTGCGTCACTTCTCAAACGG
CAATGCAGTCGCCAACTTTACGGTGGCAACTTCTGAGACTTGGCAGGATAAAGCGACCGGTCAGCAACGCGAAAAAACCG
AGTGGCACCGCATCTCTGTCATGGGCAAACTGGCTGAGATCGCGGGCAATCACCTGCGAAAGGGCTCTCAAGTGTATATT
GAAGGGCAATTGCAAACCCGCAAGTGGCAGGATAAATCTGGCCAAGAGCGCTACACCACAGAAGTGGTCGTGCAAGGCTT
TAACGGCACCATGCAAATGCTAGGTGGTCGTCAGCAAGGCGAACAAAGCAGCCCAGGCAATCAATATGCTGGTGCTGGTG
GTTCAAATCAAGGTCAGTTTGGCGCGGGCAATGCCTCTGCTAATGCACCGACTAATCCAGGCCAATCTGGCGCACCAGGT
GGATTTACCCCAAGCCCTGATGACTATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

62.712

100

0.638
  ssb Glaesserella parasuis strain SC1401

49.73

100

0.529
  ssb Neisseria gonorrhoeae MS11

44.382

100

0.454
  ssb Neisseria meningitidis MC58

44.382

100

0.454

Multiple sequence alignment