Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AACL51_RS28470 Genome accession   NZ_CP151537
Coordinates   6066396..6066992 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PA98zyfcau     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6061396..6071992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACL51_RS28460 (AACL51_28460) - 6062676..6065147 (-) 2472 WP_116825408.1 penicillin-binding protein 1A -
  AACL51_RS28465 (AACL51_28465) pilM 6065332..6066396 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  AACL51_RS28470 (AACL51_28470) pilN 6066396..6066992 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  AACL51_RS28475 (AACL51_28475) pilO 6066989..6067612 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  AACL51_RS28480 (AACL51_28480) comL/pilP 6067609..6068133 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  AACL51_RS28485 (AACL51_28485) pilQ 6068187..6070331 (+) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  AACL51_RS28490 (AACL51_28490) aroK 6070343..6070861 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=888952 AACL51_RS28470 WP_003095839.1 6066396..6066992(+) (pilN) [Pseudomonas aeruginosa strain PA98zyfcau]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=888952 AACL51_RS28470 WP_003095839.1 6066396..6066992(+) (pilN) [Pseudomonas aeruginosa strain PA98zyfcau]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369