Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU35_RS01485 Genome accession   NZ_AP024864
Coordinates   306814..307374 (+) Length   186 a.a.
NCBI ID   WP_102484991.1    Uniprot ID   -
Organism   Vibrio breoganii strain CAIM 1829     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 301814..312374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU35_RS01470 uvrA 301953..304778 (-) 2826 WP_261825530.1 excinuclease ABC subunit UvrA -
  OCU35_RS01475 galU 304906..305784 (-) 879 WP_017028864.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU35_RS01480 - 305892..306527 (-) 636 WP_065210264.1 response regulator transcription factor -
  OCU35_RS01485 ssb 306814..307374 (+) 561 WP_102484991.1 single-stranded DNA-binding protein Machinery gene
  OCU35_RS01490 csrD 307534..309543 (+) 2010 WP_261825531.1 RNase E specificity factor CsrD -
  OCU35_RS01495 - 309593..311032 (+) 1440 WP_261825532.1 hypothetical protein -
  OCU35_RS01500 pilO 311032..311673 (+) 642 WP_065210260.1 type 4a pilus biogenesis protein PilO -
  OCU35_RS01505 - 311684..311992 (+) 309 WP_261825533.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20702.73 Da        Isoelectric Point: 5.7627

>NTDB_id=88885 OCU35_RS01485 WP_102484991.1 306814..307374(+) (ssb) [Vibrio breoganii strain CAIM 1829]
MASRGVNKVIIMGNLGQDPEVRFAANGNAIANITIATSETWRDKANGEQREKTEWHRVVLFGKTAEIAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQWPTGQMQLLGSRQGGQAPSQNQGGQQYGGAPQGGQQQQGGWGQPQQPQVHQPAQQ
QQQQKPQQAPQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=88885 OCU35_RS01485 WP_102484991.1 306814..307374(+) (ssb) [Vibrio breoganii strain CAIM 1829]
ATGGCTAGCCGTGGCGTCAACAAAGTAATTATTATGGGTAACTTAGGACAAGATCCTGAGGTTCGTTTCGCCGCAAATGG
CAATGCAATTGCAAACATTACAATTGCTACCTCTGAAACTTGGCGAGACAAAGCCAATGGCGAGCAACGCGAGAAAACAG
AATGGCACCGTGTTGTTCTGTTTGGTAAGACTGCTGAGATTGCAGGTGAGTACCTTAAAAAGGGTTCACAAGTATACATC
GAAGGCCAATTGCAAACTCGTAAGTGGCAGGATCAATCAGGCCAAGATCGCTATACAACTGAAGTTGTTGTTCAGTGGCC
TACTGGTCAGATGCAACTGCTAGGCTCTCGTCAAGGTGGTCAAGCTCCTTCACAAAACCAAGGTGGCCAGCAGTACGGTG
GCGCTCCTCAAGGTGGTCAACAGCAACAAGGCGGTTGGGGTCAACCTCAACAACCTCAAGTTCATCAGCCAGCTCAACAG
CAACAGCAGCAGAAGCCACAACAGGCTCCTCAGCAGTACAATGAGCCGCCAATGGATTTTGACGACGACATTCCGTTCTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.681

100

0.726
  ssb Glaesserella parasuis strain SC1401

50.82

98.387

0.5
  ssb Neisseria meningitidis MC58

42.781

100

0.43
  ssb Neisseria gonorrhoeae MS11

42.781

100

0.43

Multiple sequence alignment