Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RND66_RS18000 Genome accession   NZ_CP136134
Coordinates   4067491..4068036 (+) Length   181 a.a.
NCBI ID   WP_010295128.1    Uniprot ID   A0AAP8X217
Organism   Pectobacterium brasiliense strain ZRIMU1701SM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4062491..4073036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND66_RS17985 cas6f 4062621..4063175 (+) 555 WP_052902943.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
  RND66_RS17990 - 4063972..4064391 (-) 420 WP_039497841.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RND66_RS17995 uvrA 4064407..4067241 (-) 2835 WP_014916582.1 excinuclease ABC subunit UvrA -
  RND66_RS18000 ssb 4067491..4068036 (+) 546 WP_010295128.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RND66_RS18005 - 4068286..4070112 (+) 1827 WP_205594644.1 amidohydrolase -
  RND66_RS18010 - 4070325..4070783 (+) 459 WP_205594645.1 GNAT family N-acetyltransferase -
  RND66_RS18015 - 4070849..4071463 (-) 615 WP_014916585.1 hypothetical protein -
  RND66_RS18020 - 4071550..4071981 (-) 432 WP_119872205.1 carboxymuconolactone decarboxylase family protein -
  RND66_RS18025 - 4072116..4072553 (-) 438 WP_205594646.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19172.13 Da        Isoelectric Point: 5.2456

>NTDB_id=888778 RND66_RS18000 WP_010295128.1 4067491..4068036(+) (ssb) [Pectobacterium brasiliense strain ZRIMU1701SM]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=888778 RND66_RS18000 WP_010295128.1 4067491..4068036(+) (ssb) [Pectobacterium brasiliense strain ZRIMU1701SM]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACTG
AATGGCACCGTGTCGTGTTGTTCGGCAAACTGGCAGAAGTCGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTATATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGCCAGCAAC
AAGGCGGCTGGGGTCAACCTCAACAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGTCCGGCA
CAGAACAGTGCTCCAGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459