Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AABJ76_RS09680 Genome accession   NZ_AP027673
Coordinates   1993872..1994882 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain PSS-07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1988872..1999882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ76_RS09650 (VEE16_18550) nudB 1990596..1991048 (+) 453 WP_001300367.1 dihydroneopterin triphosphate diphosphatase -
  AABJ76_RS09655 (VEE16_18560) yebC 1991077..1991817 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AABJ76_RS09660 (VEE16_18570) ruvC 1991852..1992373 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  AABJ76_RS09665 (VEE16_18580) yebB 1992375..1992977 (-) 603 WP_001024915.1 YebB family permuted papain-like enzyme -
  AABJ76_RS09670 yobI 1993048..1993113 (+) 66 WP_001386853.1 stress response small protein YobI -
  AABJ76_RS09675 (VEE16_18590) ruvA 1993252..1993863 (+) 612 WP_000580328.1 Holliday junction branch migration protein RuvA -
  AABJ76_RS09680 (VEE16_18600) ruvB 1993872..1994882 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AABJ76_RS09685 (VEE16_18610) znuB 1995029..1995814 (-) 786 WP_000571465.1 zinc ABC transporter permease subunit ZnuB -
  AABJ76_RS09690 (VEE16_18620) znuC 1995811..1996566 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  AABJ76_RS09695 (VEE16_18630) znuA 1996645..1997577 (+) 933 WP_001342995.1 zinc ABC transporter substrate-binding protein ZnuA -
  AABJ76_RS09700 (VEE16_18640) mepM 1997593..1998915 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=88872 AABJ76_RS09680 WP_000568519.1 1993872..1994882(+) (ruvB) [Escherichia coli strain PSS-07]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=88872 AABJ76_RS09680 WP_000568519.1 1993872..1994882(+) (ruvB) [Escherichia coli strain PSS-07]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTCGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGTTGTTTATTGATGAGATCCACCGTCTTTCGCCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGAGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
GTTATTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTTGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494