Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OC457_RS01865 Genome accession   NZ_AP024854
Coordinates   373716..374588 (-) Length   290 a.a.
NCBI ID   WP_080174493.1    Uniprot ID   A0A1T4SMQ9
Organism   Photobacterium toruni strain CECT 9189     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368716..379588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC457_RS01840 secA 368776..371508 (+) 2733 WP_080174489.1 preprotein translocase subunit SecA -
  OC457_RS01845 mutT 371558..371995 (-) 438 WP_235866930.1 8-oxo-dGTP diphosphatase MutT -
  OC457_RS01850 yacG 372115..372315 (-) 201 WP_080174490.1 DNA gyrase inhibitor YacG -
  OC457_RS01855 zapD 372323..373060 (-) 738 WP_080174491.1 cell division protein ZapD -
  OC457_RS01860 coaE 373107..373712 (-) 606 WP_080174492.1 dephospho-CoA kinase -
  OC457_RS01865 pilD 373716..374588 (-) 873 WP_080174493.1 A24 family peptidase Machinery gene
  OC457_RS01870 pilC 374648..375868 (-) 1221 WP_080174494.1 type II secretion system F family protein Machinery gene
  OC457_RS01875 pilB 375945..377630 (-) 1686 WP_080174495.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OC457_RS20850 - 377630..378064 (-) 435 WP_080174496.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32529.88 Da        Isoelectric Point: 7.2549

>NTDB_id=88831 OC457_RS01865 WP_080174493.1 373716..374588(-) (pilD) [Photobacterium toruni strain CECT 9189]
MAVLSYYPWLYPLFATIFGLLIGSFLNVVIYRLPIMMERQWRQECQDYFPQLDDPHNDTAPFNLSVPRSRCPHCNHAISA
LENIPIISWLALRGKCRECKAPISKRYPAIELLTAIMSLTVALMLPPTWWAIAVLGCSFALIALTFIDIDKMLLPDQITL
PLMWAGILLAVIGISPISLTDSIIGAMAGYLSLWSIFWVFKLLTKKDGMGYGDFKLLAAIGAWVGWSLLPFVVLLSSLVG
AICGIVMLRMKHEDQQTPFSFGPYLAVAGWIAMLWGEPILHWYVTSYLGL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=88831 OC457_RS01865 WP_080174493.1 373716..374588(-) (pilD) [Photobacterium toruni strain CECT 9189]
ATGGCTGTATTGAGTTATTACCCGTGGCTATACCCACTGTTTGCCACTATTTTTGGTTTGTTGATTGGTAGTTTTTTAAA
TGTGGTTATTTATCGATTACCAATTATGATGGAACGCCAATGGCGTCAAGAATGTCAGGATTATTTTCCGCAGCTGGATG
ATCCACACAATGATACAGCGCCATTTAATTTAAGTGTGCCTCGCTCTCGCTGTCCTCATTGTAATCATGCTATCAGTGCG
TTAGAAAATATTCCGATTATTAGCTGGTTAGCCCTCCGTGGTAAATGCCGCGAGTGTAAAGCACCAATCAGTAAACGTTA
TCCTGCAATTGAATTACTAACCGCTATTATGAGCTTAACCGTCGCATTAATGTTACCGCCAACATGGTGGGCAATCGCGG
TATTAGGTTGTAGCTTTGCGCTAATTGCGCTGACCTTTATTGATATCGATAAAATGCTGCTACCTGATCAAATCACACTG
CCATTAATGTGGGCGGGTATTTTATTGGCTGTCATTGGTATCAGTCCAATTTCATTAACCGATTCAATTATTGGTGCCAT
GGCAGGATATTTATCACTATGGTCAATTTTTTGGGTATTTAAACTACTAACCAAAAAAGATGGTATGGGTTATGGCGATT
TTAAATTATTAGCAGCTATTGGTGCGTGGGTCGGTTGGTCATTATTACCGTTTGTGGTGTTGTTATCTTCCCTTGTCGGA
GCGATATGCGGCATTGTCATGCTACGAATGAAACATGAAGATCAACAAACACCGTTCTCTTTTGGACCATACCTTGCTGT
TGCTGGCTGGATTGCTATGCTATGGGGCGAACCAATTTTACATTGGTATGTTACTTCATATTTAGGGCTTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-123)

Type IV leader peptidase family (Peptidase_A24)

(139-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4SMQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.932

100

0.603
  pilD Vibrio campbellii strain DS40M4

59.794

100

0.6
  pilD Acinetobacter nosocomialis M2

52.453

91.379

0.479
  pilD Acinetobacter baumannii D1279779

52.075

91.379

0.476
  pilD Neisseria gonorrhoeae MS11

46.207

100

0.462

Multiple sequence alignment