Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OC457_RS01870 Genome accession   NZ_AP024854
Coordinates   374648..375868 (-) Length   406 a.a.
NCBI ID   WP_080174494.1    Uniprot ID   A0A1T4SMW2
Organism   Photobacterium toruni strain CECT 9189     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369648..380868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC457_RS01845 mutT 371558..371995 (-) 438 WP_235866930.1 8-oxo-dGTP diphosphatase MutT -
  OC457_RS01850 yacG 372115..372315 (-) 201 WP_080174490.1 DNA gyrase inhibitor YacG -
  OC457_RS01855 zapD 372323..373060 (-) 738 WP_080174491.1 cell division protein ZapD -
  OC457_RS01860 coaE 373107..373712 (-) 606 WP_080174492.1 dephospho-CoA kinase -
  OC457_RS01865 pilD 373716..374588 (-) 873 WP_080174493.1 A24 family peptidase Machinery gene
  OC457_RS01870 pilC 374648..375868 (-) 1221 WP_080174494.1 type II secretion system F family protein Machinery gene
  OC457_RS01875 pilB 375945..377630 (-) 1686 WP_080174495.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OC457_RS20850 - 377630..378064 (-) 435 WP_080174496.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OC457_RS01885 - 378559..379935 (-) 1377 WP_080174497.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45315.29 Da        Isoelectric Point: 9.5863

>NTDB_id=88832 OC457_RS01870 WP_080174494.1 374648..375868(-) (pilC) [Photobacterium toruni strain CECT 9189]
MVAATKIRYYQWRGINQAGRKVSGVTMGFQEQEVRHQLTEQMINIKKIKRTTPSTLNRLRNQIKSEDITMVTRQLATMVE
SGVPVVQALTLMANSHHKAEMRATLIQVTNQVEAGSSLAKAMRSSSPLFDKFYCDLVDTGEQTGHLGQVFGRIAVYREKA
EAMRKKIIKAMIYPSMVSITAILVTVLMLVFVIPQFAAIFSGFGAELPWFTRQVMKASDFLVNYGTYLGAAIVVAVLLFR
YCYKHYYRFHYRIDKLSLKLPLVGGVLLKATISRFARTLATTFNAGIPLLTGIQSAAKTSNNLYIEQAIDDVYNNTAAGM
PLYLALRQADVFPELMLQMVMIGEESGALDDMLNKMAQLYEDDVDNTVDNLGQILEPFIIIILGTIIGGLLVAMYMPIFT
LMSVIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=88832 OC457_RS01870 WP_080174494.1 374648..375868(-) (pilC) [Photobacterium toruni strain CECT 9189]
ATGGTTGCTGCCACTAAAATTCGTTACTACCAATGGCGGGGCATCAATCAAGCCGGACGTAAAGTCTCGGGAGTGACGAT
GGGATTTCAAGAACAAGAAGTCCGCCACCAACTCACCGAGCAAATGATCAATATTAAAAAAATTAAACGCACCACGCCCA
GCACCTTAAACCGTCTTCGTAATCAGATAAAATCTGAAGATATCACCATGGTCACTCGCCAATTAGCAACCATGGTTGAA
TCTGGAGTCCCTGTGGTGCAAGCATTAACACTAATGGCCAATAGCCACCACAAAGCAGAAATGCGCGCCACCCTCATTCA
AGTAACGAATCAAGTTGAAGCGGGATCGTCATTAGCCAAAGCAATGCGCTCGAGTTCACCACTGTTTGATAAATTCTATT
GCGATTTGGTTGATACAGGCGAGCAAACCGGACACCTTGGACAAGTCTTTGGTCGCATTGCGGTGTATCGCGAAAAAGCT
GAAGCGATGCGCAAAAAGATCATTAAAGCGATGATCTACCCCTCTATGGTATCGATCACCGCAATATTAGTCACCGTACT
CATGTTGGTGTTTGTAATTCCGCAATTTGCCGCAATTTTTAGTGGCTTTGGCGCAGAACTGCCATGGTTTACTCGTCAAG
TAATGAAAGCTTCAGACTTTCTGGTTAACTACGGGACTTATCTAGGGGCTGCCATTGTGGTGGCTGTACTGCTGTTTCGC
TACTGTTATAAGCATTATTACCGCTTCCACTATCGCATTGATAAACTGAGCCTAAAGTTACCACTTGTCGGTGGAGTATT
ACTTAAAGCAACCATTTCCCGTTTTGCACGAACGCTTGCCACCACCTTTAATGCTGGTATTCCACTGTTAACAGGTATTC
AATCTGCAGCTAAAACCAGTAATAATCTTTATATTGAGCAAGCAATTGATGACGTTTATAACAACACCGCAGCGGGTATG
CCTTTATACTTAGCTCTACGTCAAGCTGATGTTTTCCCAGAATTAATGCTACAGATGGTAATGATTGGTGAAGAATCTGG
CGCACTTGATGATATGCTCAATAAAATGGCACAATTGTACGAAGATGATGTCGATAATACTGTCGATAACCTTGGTCAAA
TTCTAGAACCGTTTATTATCATTATTCTCGGTACCATTATCGGTGGTTTATTGGTCGCGATGTACATGCCTATTTTCACG
CTAATGAGCGTTATAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4SMW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

55.25

98.522

0.544
  pilC Vibrio campbellii strain DS40M4

51.613

99.261

0.512
  pilG Neisseria meningitidis 44/76-A

40.447

99.261

0.401
  pilG Neisseria gonorrhoeae MS11

40.447

99.261

0.401
  pilC Pseudomonas stutzeri DSM 10701

40.299

99.015

0.399
  pilC Acinetobacter baylyi ADP1

40.554

97.783

0.397
  pilC Acinetobacter baumannii D1279779

40.05

97.783

0.392
  pilC Legionella pneumophila strain ERS1305867

39.899

97.537

0.389

Multiple sequence alignment