Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OC457_RS01430 Genome accession   NZ_AP024854
Coordinates   285411..285971 (+) Length   186 a.a.
NCBI ID   WP_080174418.1    Uniprot ID   A0A1T4SFE6
Organism   Photobacterium toruni strain CECT 9189     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 280411..290971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC457_RS01420 uvrA 280990..283815 (-) 2826 WP_080174416.1 excinuclease ABC subunit UvrA -
  OC457_RS01425 galU 283955..284821 (-) 867 WP_080174417.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OC457_RS01430 ssb 285411..285971 (+) 561 WP_080174418.1 single-stranded DNA-binding protein Machinery gene
  OC457_RS01435 - 286121..287584 (+) 1464 WP_080174419.1 phosphoethanolamine transferase -
  OC457_RS01440 - 287700..287807 (-) 108 WP_235866927.1 LysR family transcriptional regulator -
  OC457_RS01445 csrD 287951..289867 (+) 1917 WP_080174420.1 RNase E specificity factor CsrD -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20621.69 Da        Isoelectric Point: 5.1976

>NTDB_id=88830 OC457_RS01430 WP_080174418.1 285411..285971(+) (ssb) [Photobacterium toruni strain CECT 9189]
MASRGVNKVILIGNLGNDPEIRYMPSGGAVANITIATSESWRDKSTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRNGGQGAPMGGQQQQQNQGNWGQPQQPAAAPQQNYAPQQQHQPA
PQQSAPQQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=88830 OC457_RS01430 WP_080174418.1 285411..285971(+) (ssb) [Photobacterium toruni strain CECT 9189]
ATGGCCAGTCGTGGCGTAAATAAAGTTATCTTAATTGGTAACTTGGGAAATGATCCAGAAATTCGTTACATGCCTAGCGG
TGGTGCAGTAGCTAATATTACTATTGCAACCTCTGAGTCTTGGCGTGATAAGTCTACCGGTGAGCAACGTGAAAAAACAG
AATGGCACCGTGTAGCATTGTTTGGCAAATTAGCAGAAGTCGCTGGTGAGTACCTACGTAAAGGTTCACAAGTGTACATC
GAAGGCCAATTACAAACCCGTAAATGGCAAAACCAACAAGGCCAAGATCAATACACTACTGAAGTCGTTGTTCAAGGTTT
TAATGGTGTAATGCAAATGTTAGGCGGCCGTAATGGCGGTCAAGGTGCTCCAATGGGTGGCCAGCAACAACAGCAGAATC
AAGGTAATTGGGGTCAGCCTCAACAACCTGCAGCTGCGCCACAACAAAATTATGCACCACAGCAACAACATCAGCCAGCG
CCGCAGCAGTCTGCTCCACAGCAACCGCAGCAGCAATATAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTA
G

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4SFE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.128

100

0.78
  ssb Glaesserella parasuis strain SC1401

53.439

100

0.543
  ssb Neisseria gonorrhoeae MS11

45.263

100

0.462
  ssb Neisseria meningitidis MC58

43.784

99.462

0.435

Multiple sequence alignment