Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   OCU77_RS05980 Genome accession   NZ_AP024852
Coordinates   1233121..1233705 (+) Length   194 a.a.
NCBI ID   WP_048897015.1    Uniprot ID   A0A0J8VHX1
Organism   Photobacterium swingsii strain CECT 7576     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228121..1238705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU77_RS05955 ptsG 1228173..1229603 (+) 1431 WP_048897012.1 PTS glucose transporter subunit IIBC -
  OCU77_RS05960 - 1229788..1229919 (+) 132 WP_261855997.1 hypothetical protein -
  OCU77_RS05965 - 1229983..1230882 (-) 900 WP_048897013.1 lysine exporter LysO family protein -
  OCU77_RS05970 - 1231055..1231978 (-) 924 WP_048897286.1 HDOD domain-containing protein -
  OCU77_RS05975 - 1232101..1232676 (-) 576 WP_048897014.1 LON peptidase substrate-binding domain-containing protein -
  OCU77_RS05980 tfoX 1233121..1233705 (+) 585 WP_048897015.1 TfoX/Sxy family DNA transformation protein Regulator
  OCU77_RS05985 dsdC 1233807..1234718 (+) 912 WP_048897016.1 DNA-binding transcriptional regulator DsdC -
  OCU77_RS05990 - 1234809..1235330 (+) 522 WP_048897017.1 DUF2058 domain-containing protein -
  OCU77_RS05995 - 1235394..1236638 (-) 1245 WP_107302370.1 dicarboxylate/amino acid:cation symporter -
  OCU77_RS06000 trpA 1237011..1237817 (-) 807 WP_048897018.1 tryptophan synthase subunit alpha -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22074.49 Da        Isoelectric Point: 9.3224

>NTDB_id=88808 OCU77_RS05980 WP_048897015.1 1233121..1233705(+) (tfoX) [Photobacterium swingsii strain CECT 7576]
MSFKEEYFTYLSGFGKYEKRSMFGGMGVFINGAMYAIITNKSLFLRGGDALDDRLKQLGCAKFKHIKRSTTAIVNYYDIT
PLFNESRELSNELVEHSIQIARQDKVEKAADKNKRIRDLPNMRLTLERMVKKAGVNDVTSFMELGASEVFCKVRQVHGQD
LDIKLLWMFAGAVQGCHWTLLNDDQKSSLLSAVN

Nucleotide


Download         Length: 585 bp        

>NTDB_id=88808 OCU77_RS05980 WP_048897015.1 1233121..1233705(+) (tfoX) [Photobacterium swingsii strain CECT 7576]
ATGTCGTTTAAGGAAGAATATTTCACCTACCTCAGTGGATTTGGCAAGTACGAAAAACGTTCAATGTTTGGTGGGATGGG
GGTCTTTATTAACGGAGCTATGTACGCCATTATCACTAATAAGTCATTGTTTTTAAGAGGTGGTGATGCGTTGGATGACC
GTTTGAAACAGCTAGGTTGTGCAAAGTTTAAACACATCAAACGTAGCACAACTGCGATCGTTAATTACTACGATATTACG
CCGCTCTTTAATGAATCTCGCGAGTTGAGCAATGAATTAGTTGAACACTCGATCCAAATTGCACGCCAAGATAAAGTCGA
GAAAGCGGCAGACAAAAACAAACGTATTCGTGACTTACCAAATATGCGTTTAACCTTAGAACGCATGGTAAAAAAAGCCG
GTGTGAACGATGTAACCAGTTTTATGGAGCTGGGTGCATCAGAAGTGTTTTGTAAAGTACGCCAAGTACACGGACAAGAT
TTAGACATTAAGCTATTGTGGATGTTTGCTGGTGCTGTTCAAGGTTGCCATTGGACGTTGTTGAATGATGATCAGAAGTC
GAGCTTATTGAGTGCTGTTAATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(113-191)

TfoX N-terminal domain (TfoX_N)

(10-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8VHX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

50.794

97.423

0.495
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

50.794

97.423

0.495
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

50.794

97.423

0.495
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

50.794

97.423

0.495
  tfoX Vibrio cholerae strain A1552

50.794

97.423

0.495
  tfoX Vibrio campbellii strain DS40M4

50.802

96.392

0.49
  tfoX Aliivibrio fischeri ES114

48.168

98.454

0.474
  tfoX Vibrio parahaemolyticus RIMD 2210633

49.198

96.392

0.474

Multiple sequence alignment