Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RS399_RS19815 Genome accession   NZ_CP135973
Coordinates   3907271..3909001 (+) Length   576 a.a.
NCBI ID   WP_060398997.1    Uniprot ID   A0A9Q4HTQ2
Organism   Bacillus inaquosorum strain SI3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3902271..3914001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS19790 (RS399_19790) - 3902630..3902884 (+) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -
  RS399_RS19795 (RS399_19795) - 3902874..3903764 (+) 891 WP_003236893.1 polyprenyl synthetase family protein -
  RS399_RS19800 (RS399_19800) dxs 3903945..3905846 (+) 1902 WP_060398999.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RS399_RS19805 (RS399_19805) - 3905843..3906688 (+) 846 WP_084993749.1 TlyA family RNA methyltransferase -
  RS399_RS19810 (RS399_19810) argR 3906786..3907235 (+) 450 WP_003236889.1 arginine repressor ArgR -
  RS399_RS19815 (RS399_19815) recN 3907271..3909001 (+) 1731 WP_060398997.1 DNA repair protein RecN Machinery gene
  RS399_RS19820 (RS399_19820) spoIVB 3909176..3910456 (+) 1281 WP_084993751.1 SpoIVB peptidase -
  RS399_RS19825 (RS399_19825) spo0A 3910732..3911535 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  RS399_RS19830 (RS399_19830) - 3911677..3911856 (+) 180 WP_084993752.1 hypothetical protein -
  RS399_RS19835 (RS399_19835) - 3912090..3913208 (-) 1119 WP_084993755.1 NADH-dependent flavin oxidoreductase -
  RS399_RS19840 (RS399_19840) - 3913281..3913414 (-) 134 Protein_3853 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64579.35 Da        Isoelectric Point: 4.7094

>NTDB_id=888058 RS399_RS19815 WP_060398997.1 3907271..3909001(+) (recN) [Bacillus inaquosorum strain SI3]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVFDIC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGASV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPIVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTHVKPLSKQEKVVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=888058 RS399_RS19815 WP_060398997.1 3907271..3909001(+) (recN) [Bacillus inaquosorum strain SI3]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGAGGATCATCTGAAT
TTGTCAGATATGGAGAAGCAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCCGTTTTTGATATATGC
GCTGAGCAAGGAATCGACGTTTCAGACGAAATGATCGTTATGAGAAGGGATATCAGCACGAGTGGAAAAAGCGTTTGCCG
GGTTAATGGCAAGCTTGTCACGATTGCCTCGTTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGAGCCGAAGTGGAAAGCGCGCTCCAA
GCATATCAGGAAGGATACCAGCGTTACATGAAGCTGCTTAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGCCTTGATCTCATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAATGAAGATGAACAGCTCC
AAGAAGAACGCCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCGTATAACGCGCTTCGCAGTGAG
CAAGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATATCCGATATTAATGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATCTTCTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGACGAGCTTGAGT
ATGATCCGGAACGCCTGAATTATATTGAAACACGTCTTAATGAAATCAAACAGCTGAAACGAAAATATGGTGCATCTGTT
GAGGATATTTTAGAATACGCTTCTAAAATTGAAGAAGAGATAGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTTTCACAAATCAGGAAAGCATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAGTCAACGTTTGATACGGAATTTAAGGTC
AGAACAGCGTCCCGCAATGAGGAGGCGCCGATTGTAAACGGCCAGCCTGTTCAGCTGACTGAACAAGGGATAGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGTGAACCGCTAAAATCTCTTTCGAAAGTCGCTTCCGGGGGAGAGCTGTCTCGGG
TAATGCTTGCCATAAAAAGCATATTTTCCTCTCAACAGGATGTGACGTCGATTATATTCGATGAGGTCGATACCGGTGTA
AGCGGCAGAGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCACAAGTGCTGTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATACGCACCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACCACGACACATGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGTGGAAATCGGGCGCATGATTGCAGGAGTCGAAGTAACAGACTTGACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.743

100

0.977