Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RS399_RS19825 Genome accession   NZ_CP135973
Coordinates   3910732..3911535 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3905732..3916535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS19805 (RS399_19805) - 3905843..3906688 (+) 846 WP_084993749.1 TlyA family RNA methyltransferase -
  RS399_RS19810 (RS399_19810) argR 3906786..3907235 (+) 450 WP_003236889.1 arginine repressor ArgR -
  RS399_RS19815 (RS399_19815) recN 3907271..3909001 (+) 1731 WP_060398997.1 DNA repair protein RecN Machinery gene
  RS399_RS19820 (RS399_19820) spoIVB 3909176..3910456 (+) 1281 WP_084993751.1 SpoIVB peptidase -
  RS399_RS19825 (RS399_19825) spo0A 3910732..3911535 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  RS399_RS19830 (RS399_19830) - 3911677..3911856 (+) 180 WP_084993752.1 hypothetical protein -
  RS399_RS19835 (RS399_19835) - 3912090..3913208 (-) 1119 WP_084993755.1 NADH-dependent flavin oxidoreductase -
  RS399_RS19840 (RS399_19840) - 3913281..3913414 (-) 134 Protein_3853 hypothetical protein -
  RS399_RS19845 (RS399_19845) - 3913742..3914035 (+) 294 WP_084993903.1 hypothetical protein -
  RS399_RS19850 (RS399_19850) - 3914057..3914677 (+) 621 WP_084993757.1 N-acetylmuramoyl-L-alanine amidase -
  RS399_RS19855 (RS399_19855) - 3914756..3915487 (+) 732 WP_084993759.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=888059 RS399_RS19825 WP_003226427.1 3910732..3911535(+) (spo0A) [Bacillus inaquosorum strain SI3]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=888059 RS399_RS19825 WP_003226427.1 3910732..3911535(+) (spo0A) [Bacillus inaquosorum strain SI3]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGTGTAGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTGGATATTATTATGCCGCATTTGGACGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGACATATCCGTCAGGTCAGCGGAAATGCCAGCAGCGTGACGCATCGTGCGC
CATCCTCGCAAAGCAGCATTATACGCAGTAGCCAGCCTGAACCAAAAAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCGGCGCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTAGCGTGGAGCAGAGGAAACATTGACTCCATTTCCTCATTGTTCGGCTATACAGTC
AGCATGACAAAAGCTAAACCGACAAATTCAGAGTTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1