Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RS399_RS11070 Genome accession   NZ_CP135973
Coordinates   2230462..2230980 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus inaquosorum strain SI3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2225462..2235980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS11050 (RS399_11050) - 2226537..2226743 (+) 207 WP_003219236.1 DUF951 domain-containing protein -
  RS399_RS11055 (RS399_11055) - 2226794..2228797 (+) 2004 WP_084992266.1 molybdopterin-dependent oxidoreductase -
  RS399_RS11060 (RS399_11060) ychF 2228924..2230024 (+) 1101 WP_003236624.1 redox-regulated ATPase YchF -
  RS399_RS11065 (RS399_11065) rpsF 2230135..2230422 (+) 288 WP_003236622.1 30S ribosomal protein S6 -
  RS399_RS11070 (RS399_11070) ssbA 2230462..2230980 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  RS399_RS11075 (RS399_11075) rpsR 2231024..2231263 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  RS399_RS11080 (RS399_11080) xth 2231324..2232082 (+) 759 WP_084992264.1 exodeoxyribonuclease III -
  RS399_RS11085 (RS399_11085) - 2232141..2233076 (+) 936 WP_084992262.1 LacI family DNA-binding transcriptional regulator -
  RS399_RS11090 (RS399_11090) - 2233132..2233512 (+) 381 WP_003236616.1 VOC family protein -
  RS399_RS11095 (RS399_11095) - 2233586..2234941 (-) 1356 WP_084992260.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=888019 RS399_RS11070 WP_003219228.1 2230462..2230980(+) (ssbA) [Bacillus inaquosorum strain SI3]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=888019 RS399_RS11070 WP_003219228.1 2230462..2230980(+) (ssbA) [Bacillus inaquosorum strain SI3]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGGAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACTGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378