Detailed information NTG0887926

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RO483_RS12555
• Genome accession: NZ_CP135968
• Coordinates: 2729145..2730014 (+)
• Length: 289 a.a.
• NCBI ID: WP_054576331.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain S10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2724145..2735014

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RO483_RS12535 (RO483_12535)	nadC	2724545..2725432 (+)	888	WP_258664543.1	carboxylating nicotinate-nucleotide diphosphorylase	-
RO483_RS12540 (RO483_12540)	pilA	2725695..2726144 (+)	450	WP_065645564.1	pilin	Machinery gene
RO483_RS12545 (RO483_12545)	pilB	2726148..2727833 (+)	1686	WP_315956559.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RO483_RS12550 (RO483_12550)	pilC	2727857..2729080 (+)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
RO483_RS12555 (RO483_12555)	pilD	2729145..2730014 (+)	870	WP_054576331.1	A24 family peptidase	Machinery gene
RO483_RS12560 (RO483_12560)	coaE	2730015..2730629 (+)	615	WP_054576332.1	dephospho-CoA kinase	-
RO483_RS12565 (RO483_12565)	zapD	2730657..2731397 (+)	741	WP_005373086.1	cell division protein ZapD	-
RO483_RS12570 (RO483_12570)	yacG	2731556..2731750 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
RO483_RS12575 (RO483_12575)	rplS	2732063..2732416 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
RO483_RS12580 (RO483_12580)	trmD	2732458..2733219 (-)	762	WP_017635923.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
RO483_RS12585 (RO483_12585)	rimM	2733247..2733795 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
RO483_RS12590 (RO483_12590)	rpsP	2733825..2734073 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32537.73 Da
• Isoelectric Point: 7.0195

>NTDB_id=887926 RO483_RS12555 WP_054576331.1 2729145..2730014(+) (pilD) [Vibrio alginolyticus strain S10]
MEVFQYYPWLFVLFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=887926 RO483_RS12555 WP_054576331.1 2729145..2730014(+) (pilD) [Vibrio alginolyticus strain S10]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTCTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTACTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACGATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAGGGAATGGGATATGGTGATTTTA
AACTACTCGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTTCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.551	95.502	0.464