Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RS960_RS01575 | Genome accession | NZ_CP135966 |
| Coordinates | 358002..358505 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain ST5477 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 358002..379666 | 358002..358505 | within | 0 |
Gene organization within MGE regions
Location: 358002..379666
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RS960_RS01575 (RS960_01575) | ssbA | 358002..358505 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| RS960_RS01580 (RS960_01580) | rpsR | 358557..358799 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| RS960_RS01585 (RS960_01585) | - | 359014..360003 (-) | 990 | WP_224799327.1 | Abi family protein | - |
| RS960_RS01590 (RS960_01590) | - | 360009..361223 (-) | 1215 | WP_224799326.1 | tyrosine-type recombinase/integrase | - |
| RS960_RS01595 (RS960_01595) | - | 361227..362039 (-) | 813 | WP_049948385.1 | hypothetical protein | - |
| RS960_RS01600 (RS960_01600) | - | 362153..362848 (-) | 696 | WP_031903008.1 | helix-turn-helix domain-containing protein | - |
| RS960_RS01605 (RS960_01605) | - | 362993..363205 (+) | 213 | WP_000608987.1 | helix-turn-helix transcriptional regulator | - |
| RS960_RS01610 (RS960_01610) | - | 363238..363510 (+) | 273 | WP_031903009.1 | helix-turn-helix domain-containing protein | - |
| RS960_RS01615 (RS960_01615) | - | 363522..363668 (+) | 147 | WP_317528850.1 | pathogenicity island protein | - |
| RS960_RS01620 (RS960_01620) | tscA | 363661..363870 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| RS960_RS01625 (RS960_01625) | tscT | 363873..364172 (+) | 300 | WP_317528851.1 | type II toxin-antitoxin system toxin TscT | - |
| RS960_RS01630 (RS960_01630) | - | 364247..365863 (+) | 1617 | WP_111724375.1 | phage resistance protein | - |
| RS960_RS01635 (RS960_01635) | - | 366039..366842 (+) | 804 | WP_317528852.1 | bifunctional DNA primase/polymerase | - |
| RS960_RS01640 (RS960_01640) | - | 366829..367101 (+) | 273 | WP_001149387.1 | hypothetical protein | - |
| RS960_RS01645 (RS960_01645) | - | 367103..367744 (+) | 642 | WP_281224265.1 | pathogenicity island protein | - |
| RS960_RS01650 (RS960_01650) | - | 368261..368602 (+) | 342 | WP_001190599.1 | hypothetical protein | - |
| RS960_RS01655 (RS960_01655) | - | 368614..369192 (+) | 579 | WP_317528650.1 | pathogenicity island protein | - |
| RS960_RS01660 (RS960_01660) | - | 369210..369428 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| RS960_RS01665 (RS960_01665) | - | 369479..370006 (+) | 528 | WP_001836980.1 | spore coat protein | - |
| RS960_RS01670 (RS960_01670) | - | 370138..370350 (+) | 213 | WP_025174984.1 | hypothetical protein | - |
| RS960_RS01675 (RS960_01675) | - | 370347..370916 (+) | 570 | WP_052995956.1 | terminase small subunit | - |
| RS960_RS01680 (RS960_01680) | tst | 371071..371775 (-) | 705 | WP_317528853.1 | toxic shock syndrome toxin TSST-1 | - |
| RS960_RS01685 (RS960_01685) | - | 372235..372585 (+) | 351 | WP_262537525.1 | pathogenicity island protein | - |
| RS960_RS01690 (RS960_01690) | - | 372704..373216 (+) | 513 | WP_000813313.1 | hypothetical protein | - |
| RS960_RS01695 (RS960_01695) | - | 373232..373414 (+) | 183 | WP_262537520.1 | hypothetical protein | - |
| RS960_RS01700 (RS960_01700) | - | 373886..374611 (+) | 726 | WP_262537518.1 | CPBP family intramembrane glutamic endopeptidase | - |
| RS960_RS01705 (RS960_01705) | - | 375263..376270 (-) | 1008 | WP_262537515.1 | Abi family protein | - |
| RS960_RS01710 (RS960_01710) | - | 376276..376958 (-) | 683 | Protein_339 | tyrosine-type recombinase/integrase | - |
| RS960_RS01715 (RS960_01715) | selX | 377164..377775 (+) | 612 | WP_262537512.1 | staphylococcal enterotoxin-like toxin X | - |
| RS960_RS01720 (RS960_01720) | - | 378144..378512 (+) | 369 | WP_262607859.1 | YxeA family protein | - |
| RS960_RS01725 (RS960_01725) | - | 378693..379265 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| RS960_RS01730 (RS960_01730) | - | 379403..379666 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=887864 RS960_RS01575 WP_000934799.1 358002..358505(+) (ssbA) [Staphylococcus aureus strain ST5477]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=887864 RS960_RS01575 WP_000934799.1 358002..358505(+) (ssbA) [Staphylococcus aureus strain ST5477]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |