Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   RS899_RS17225 Genome accession   NZ_CP135919
Coordinates   3809428..3809775 (-) Length   115 a.a.
NCBI ID   WP_054907330.1    Uniprot ID   A0A1B8V420
Organism   Pseudomonas sp. C9-3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3804428..3814775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS899_RS17210 uvrB 3805352..3807367 (-) 2016 WP_315807666.1 excinuclease ABC subunit UvrB -
  RS899_RS17215 - 3807552..3808748 (+) 1197 WP_054907331.1 amino acid aminotransferase -
  RS899_RS17225 comEA/comE1 3809428..3809775 (-) 348 WP_054907330.1 ComEA family DNA-binding protein Machinery gene
  RS899_RS17230 - 3809972..3811960 (-) 1989 WP_054907329.1 polysaccharide biosynthesis protein -
  RS899_RS17235 - 3812031..3813056 (-) 1026 WP_315807667.1 glycosyltransferase family 4 protein -
  RS899_RS17240 - 3813053..3814015 (-) 963 WP_315807668.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 11765.62 Da        Isoelectric Point: 10.4308

>NTDB_id=887675 RS899_RS17225 WP_054907330.1 3809428..3809775(-) (comEA/comE1) [Pseudomonas sp. C9-3]
MKKSLLSVARLILLAGLSFGGAALAATNGAPAVKPPAETTASAEKAPVAQVAAVNINSASAEELQHSLKGIGKVKAQAIV
DYRTTNGPFTTVDQLLEVKGIGKGTLDKNRDKISL

Nucleotide


Download         Length: 348 bp        

>NTDB_id=887675 RS899_RS17225 WP_054907330.1 3809428..3809775(-) (comEA/comE1) [Pseudomonas sp. C9-3]
ATGAAGAAGAGTCTGCTTTCCGTTGCGCGTCTGATTCTGTTGGCGGGCCTCTCGTTCGGTGGCGCCGCTCTGGCGGCCAC
CAATGGGGCCCCGGCCGTTAAACCTCCAGCCGAAACCACTGCTTCAGCCGAGAAGGCACCTGTTGCCCAGGTGGCGGCCG
TGAATATCAACAGCGCATCGGCTGAAGAGTTGCAGCATTCCCTGAAAGGTATTGGCAAGGTGAAAGCCCAGGCCATCGTT
GACTACCGTACAACCAACGGGCCGTTCACCACGGTCGATCAATTGCTGGAAGTGAAGGGCATCGGCAAGGGGACGCTGGA
CAAGAATCGCGACAAGATTTCGCTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(53-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8V420

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

47.967

100

0.513
  comEA Vibrio cholerae C6706

58.228

68.696

0.4
  comEA Vibrio cholerae strain A1552

58.228

68.696

0.4
  comE1/comEA Haemophilus influenzae Rd KW20

56

65.217

0.365