Detailed information NTG0887670

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RS899_RS11880
• Genome accession: NZ_CP135919
• Coordinates: 2659124..2660353 (-)
• Length: 409 a.a.
• NCBI ID: WP_175405569.1
• Uniprot ID: -
• Organism: Pseudomonas sp. C9-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2654124..2665353

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS899_RS11865	-	2655303..2656121 (+)	819	WP_233300184.1	helix-turn-helix domain-containing protein	-
RS899_RS11870	-	2656238..2657122 (-)	885	WP_024767266.1	DMT family transporter	-
RS899_RS11875	-	2657643..2658893 (+)	1251	WP_315810035.1	OprD family porin	-
RS899_RS11880	pilU	2659124..2660353 (-)	1230	WP_175405569.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
RS899_RS11885	-	2660540..2660818 (+)	279	WP_315810036.1	peptidylprolyl isomerase	-
RS899_RS11890	-	2660831..2661193 (+)	363	WP_024767269.1	MmcQ/YjbR family DNA-binding protein	-
RS899_RS11895	-	2661193..2661747 (+)	555	WP_315810037.1	putative glycolipid-binding domain-containing protein	-
RS899_RS11900	-	2661904..2663085 (+)	1182	WP_315810038.1	MFS transporter	-
RS899_RS11905	-	2663369..2664646 (+)	1278	WP_054906933.1	OprD family porin	-
RS899_RS11910	-	2664716..2664997 (-)	282	WP_054906934.1	hypothetical protein	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 44658.02 Da
• Isoelectric Point: 6.1288

>NTDB_id=887670 RS899_RS11880 WP_175405569.1 2659124..2660353(-) (pilU) [Pseudomonas sp. C9-3]
MDIQAMLKILATQDGSDLYLSTGAPPCAKFNGVLKPLSNEPMKAGDVARIGYGLMDEEQRAEFDRELEMNLAISVPGVGR
FRINLFKQRNEVSIVARNIKLDIPLFDDLKLPEVLLKVVMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PIEYVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTQDGKRRAAVEVLLGTATISDIIKRGDFSSIKEIMDKSRALGMQTFDQAL
FDLAVEGAITEEEAVKNADSANNLRLKLKLYKDNPGSVGSTATPAAAKPAAPAPVAPPPAAQPVEASSWGLELALEEIEA
EDAEKPAGQ

Nucleotide

• Length: 1230 bp

>NTDB_id=887670 RS899_RS11880 WP_175405569.1 2659124..2660353(-) (pilU) [Pseudomonas sp. C9-3]
ATGGATATCCAAGCGATGCTCAAGATCCTGGCCACCCAGGATGGTTCGGATCTTTACCTCTCCACCGGCGCGCCGCCCTG
CGCCAAGTTCAACGGGGTGCTCAAGCCCCTGTCCAACGAGCCGATGAAGGCAGGCGATGTCGCCCGCATCGGCTATGGGC
TGATGGACGAGGAGCAGCGTGCGGAGTTCGACCGCGAGCTGGAGATGAACCTGGCGATTTCAGTGCCCGGTGTAGGCCGT
TTCCGGATCAACCTGTTCAAGCAGCGCAATGAAGTGTCCATCGTGGCGCGCAACATCAAGCTGGACATTCCGCTGTTCGA
TGACTTGAAGCTGCCCGAAGTGCTGCTCAAGGTGGTCATGGAGAAGCGCGGCCTGGTGCTCTTCGTCGGCGGCACCGGCT
CGGGCAAGTCCACCTCCCTGGCGGCGCTGATCGACCACCGCAACCGCAACAGTGGCGGCCACATCATCACCATCGAAGAC
CCCATCGAATACGTGCACCGGCACCGCAAGTCGATCATCAACCAGCGCGAAGTGGGCGTGGACACCCGCAGCTTCCATGC
CGCACTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGTGACCGCGAGACCATGGAGCACG
CCCTGGCCTTCGCCGACACCGGCCACCTGGCGATCTCCACGCTGCACGCGAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAGGAGCGCCGGCCGCAGTTGCTCAACGACCTGGGCAACAACCTCAAGGCGTTCGTTTCCCAGCG
CCTGGTACGCACCCAGGACGGCAAGCGCCGTGCAGCAGTGGAAGTGCTGCTGGGCACGGCGACCATCAGCGACATCATCA
AGCGTGGCGACTTCAGTTCGATCAAGGAGATCATGGACAAGTCCCGTGCCTTGGGCATGCAGACCTTCGACCAGGCGCTG
TTCGACCTGGCGGTGGAAGGGGCGATCACCGAGGAAGAGGCGGTGAAGAACGCCGACTCGGCGAACAACCTGCGGCTGAA
GCTCAAGCTGTACAAGGACAACCCGGGCAGCGTCGGCAGCACTGCCACACCTGCGGCTGCCAAGCCAGCCGCCCCGGCGC
CGGTTGCTCCGCCGCCGGCCGCCCAGCCTGTCGAGGCTTCGAGTTGGGGGCTGGAACTGGCGCTGGAAGAGATCGAGGCG
GAAGACGCCGAGAAGCCGGCCGGGCAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.303	87.286	0.491
pilU	Acinetobacter baylyi ADP1	52.958	86.797	0.46
pilU	Vibrio cholerae strain A1552	50.139	88.264	0.443
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.386	95.599	0.377