Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RS889_RS03885 Genome accession   NZ_CP135917
Coordinates   837365..837919 (-) Length   184 a.a.
NCBI ID   WP_021017059.1    Uniprot ID   A0A2I5TGX9
Organism   Prodigiosinella aquatilis strain K61     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 820798..836662 837365..837919 flank 703


Gene organization within MGE regions


Location: 820798..837919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS889_RS03800 - 820798..822018 (+) 1221 WP_290180527.1 hypothetical protein -
  RS889_RS03805 - 822022..823071 (+) 1050 WP_315709378.1 hypothetical protein -
  RS889_RS03810 - 823064..824191 (+) 1128 WP_315709379.1 glycosyltransferase family 4 protein -
  RS889_RS03815 - 824389..824697 (+) 309 WP_290180506.1 IS66 family insertion sequence element accessory protein TnpB -
  RS889_RS03820 tnpB 824697..825065 (+) 369 WP_290180505.1 IS66 family insertion sequence element accessory protein TnpB -
  RS889_RS03825 - 825111..826697 (+) 1587 WP_315707817.1 IS66 family transposase -
  RS889_RS03830 - 826729..827394 (-) 666 WP_021017073.1 amino acid ABC transporter permease -
  RS889_RS03835 - 827406..828068 (-) 663 WP_315709380.1 amino acid ABC transporter permease -
  RS889_RS03840 - 828143..828973 (-) 831 WP_315709381.1 transporter substrate-binding domain-containing protein -
  RS889_RS03845 - 829002..829916 (-) 915 WP_315709382.1 aminotransferase class IV -
  RS889_RS03850 - 829937..830725 (-) 789 WP_315709384.1 amino acid ABC transporter ATP-binding protein -
  RS889_RS03855 - 830751..831437 (-) 687 WP_315709386.1 GntR family transcriptional regulator -
  RS889_RS03860 - 831765..831863 (+) 99 Protein_752 IS1 family transposase -
  RS889_RS03865 modA 831989..832708 (+) 720 WP_315709387.1 molybdate ABC transporter substrate-binding protein -
  RS889_RS03870 - 832705..833403 (+) 699 WP_021017066.1 ABC transporter permease subunit -
  RS889_RS03875 modC 833403..834506 (+) 1104 WP_315709389.1 molybdenum ABC transporter ATP-binding protein -
  RS889_RS03880 - 834869..836749 (-) 1881 WP_315709390.1 reverse transcriptase domain-containing protein -
  RS889_RS03885 ssb 837365..837919 (-) 555 WP_021017059.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19368.47 Da        Isoelectric Point: 5.7627

>NTDB_id=887625 RS889_RS03885 WP_021017059.1 837365..837919(-) (ssb) [Prodigiosinella aquatilis strain K61]
MASRGVNKVILLGHLGQDPEVRYMPNGGAVANITLATSEAWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWTDQSGQDRYTTEVVVNVGGTMQMIGGRAGGGAAAPGGAAPAGGGNPQQGGWGQPQQPPAANQFSGGAQAAA
PRPQNTPAPSSNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=887625 RS889_RS03885 WP_021017059.1 837365..837919(-) (ssb) [Prodigiosinella aquatilis strain K61]
ATGGCCAGCAGAGGCGTTAATAAAGTGATACTTCTCGGGCATCTGGGACAAGACCCCGAAGTCCGTTACATGCCGAATGG
TGGCGCGGTAGCCAATATTACCCTGGCCACTTCCGAAGCCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAAAAGACAG
AATGGCACCGCGTAGTACTGTTTGGCAAACTGGCAGAAGTCGCGGGTGAATATCTCCGCAAAGGGTCTCAGGTTTATATT
GAAGGCCAGCTTCAGACCCGCAAATGGACAGATCAAAGTGGGCAGGATCGTTACACCACCGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGATCGGTGGCCGTGCAGGCGGCGGTGCGGCAGCGCCAGGTGGTGCGGCGCCAGCAGGTGGCGGGA
ATCCACAACAAGGTGGCTGGGGACAACCACAGCAACCACCTGCCGCCAACCAGTTCAGCGGTGGCGCACAGGCAGCGGCA
CCACGCCCGCAAAACACGCCAGCACCCAGCAGCAACGAACCGCCGATGGATTTTGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I5TGX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.797

100

0.75
  ssb Glaesserella parasuis strain SC1401

54.839

100

0.554
  ssb Neisseria meningitidis MC58

44.737

100

0.462
  ssb Neisseria gonorrhoeae MS11

44.737

100

0.462