Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RS401_RS27505 Genome accession   NZ_CP135601
Coordinates   5294974..5295495 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus sp. SI2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5289974..5300495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS401_RS27485 (RS401_27485) rplI 5291184..5291630 (-) 447 WP_000864235.1 50S ribosomal protein L9 -
  RS401_RS27490 (RS401_27490) - 5291627..5293600 (-) 1974 WP_001113900.1 DHH family phosphoesterase -
  RS401_RS27495 (RS401_27495) - 5293679..5294614 (-) 936 WP_315839175.1 YybS family protein -
  RS401_RS27500 (RS401_27500) rpsR 5294695..5294928 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  RS401_RS27505 (RS401_27505) ssbA 5294974..5295495 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  RS401_RS27510 (RS401_27510) rpsF 5295522..5295812 (-) 291 WP_001233779.1 30S ribosomal protein S6 -
  RS401_RS27515 (RS401_27515) ychF 5296004..5297104 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  RS401_RS27520 (RS401_27520) - 5297220..5297417 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  RS401_RS27525 (RS401_27525) - 5297438..5298319 (-) 882 WP_001991693.1 mechanosensitive ion channel family protein -
  RS401_RS27530 (RS401_27530) yyaC 5298579..5299175 (+) 597 WP_001991692.1 spore protease YyaC -
  RS401_RS27535 (RS401_27535) spo0J 5299196..5300047 (-) 852 WP_001991691.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=887137 RS401_RS27505 WP_000981967.1 5294974..5295495(-) (ssbA) [Bacillus sp. SI2]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=887137 RS401_RS27505 WP_000981967.1 5294974..5295495(-) (ssbA) [Bacillus sp. SI2]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAGCGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCGGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382