Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RS401_RS10670 Genome accession   NZ_CP135601
Coordinates   2067167..2067505 (+) Length   112 a.a.
NCBI ID   WP_000982031.1    Uniprot ID   A0A6L8PNC7
Organism   Bacillus sp. SI2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2062167..2072505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS401_RS10645 (RS401_10645) - 2062386..2063192 (-) 807 WP_001990196.1 hypothetical protein -
  RS401_RS10650 (RS401_10650) - 2063302..2063949 (+) 648 WP_001990191.1 HD domain-containing protein -
  RS401_RS10655 (RS401_10655) - 2063946..2065841 (+) 1896 WP_000783199.1 ABC-F family ATP-binding cassette domain-containing protein -
  RS401_RS10660 (RS401_10660) - 2065917..2066648 (+) 732 WP_001260645.1 Bax inhibitor-1/YccA family protein -
  RS401_RS10665 (RS401_10665) - 2066754..2067008 (+) 255 WP_000975121.1 DUF4318 domain-containing protein -
  RS401_RS10670 (RS401_10670) ssb 2067167..2067505 (+) 339 WP_000982031.1 single-stranded DNA-binding protein Machinery gene
  RS401_RS10675 (RS401_10675) - 2067531..2068121 (-) 591 WP_000943167.1 TetR/AcrR family transcriptional regulator -
  RS401_RS10680 (RS401_10680) - 2068223..2069356 (-) 1134 WP_001990190.1 FAD-dependent oxidoreductase -
  RS401_RS10685 (RS401_10685) - 2069615..2070742 (+) 1128 WP_001990189.1 conserved virulence factor C family protein -
  RS401_RS10690 (RS401_10690) - 2070746..2071129 (+) 384 WP_000634868.1 thiol-disulfide oxidoreductase DCC family protein -
  RS401_RS10695 (RS401_10695) - 2071213..2071647 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  RS401_RS10700 (RS401_10700) - 2071697..2072473 (+) 777 WP_001990188.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12893.74 Da        Isoelectric Point: 9.0926

>NTDB_id=887111 RS401_RS10670 WP_000982031.1 2067167..2067505(+) (ssb) [Bacillus sp. SI2]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTR
NYEDDQGKRIYITEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=887111 RS401_RS10670 WP_000982031.1 2067167..2067505(+) (ssb) [Bacillus sp. SI2]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTACGAAAGGGTCTCTTGTTGGAATTACCGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGAAAGAGAATATATATAACGGAAGTCGTGATTGAGAGCATTACATTTTTGGAGAGAAGGCG
CGAAGGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L8PNC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.562
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

94.643

0.554
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.327

100

0.518
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.455

98.214

0.446
  ssbB Lactococcus lactis subsp. cremoris KW2

47.619

93.75

0.446
  ssbA Streptococcus mutans UA159

43.636

98.214

0.429
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

98.214

0.42
  ssbB/cilA Streptococcus mitis NCTC 12261

42.727

98.214

0.42
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae D39

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae R6

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis SK321

41.818

98.214

0.411