Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RSK81_RS01045 Genome accession   NZ_CP135591
Coordinates   196045..198018 (-) Length   657 a.a.
NCBI ID   WP_315687102.1    Uniprot ID   -
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 191045..203018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS01030 (RSK81_01030) - 191270..192292 (-) 1023 WP_061589322.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  RSK81_RS01035 (RSK81_01035) - 192452..194158 (+) 1707 WP_315687099.1 ABC transporter ATP-binding protein -
  RSK81_RS12885 - 194160..194298 (+) 139 Protein_181 ABC transporter ATP-binding protein -
  RSK81_RS12890 - 194277..195005 (+) 729 Protein_182 ABC transporter ATP-binding protein -
  RSK81_RS12895 rcrQ 195141..195929 (+) 789 WP_410530915.1 ABC transporter ATP-binding protein Regulator
  RSK81_RS01045 (RSK81_01045) amiA 196045..198018 (-) 1974 WP_315687102.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS01050 (RSK81_01050) - 198246..198935 (+) 690 WP_002893948.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  RSK81_RS01055 (RSK81_01055) - 199201..199650 (+) 450 WP_125410571.1 8-oxo-dGTP diphosphatase -
  RSK81_RS01060 (RSK81_01060) - 199950..200930 (-) 981 WP_315687105.1 Abi family protein -
  RSK81_RS01065 (RSK81_01065) - 201235..201636 (-) 402 WP_315687107.1 transcriptional regulator -
  RSK81_RS01070 (RSK81_01070) - 201661..202164 (-) 504 WP_315687110.1 hypothetical protein -
  RSK81_RS01075 (RSK81_01075) - 202240..202479 (-) 240 WP_061589317.1 hypothetical protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 72396.31 Da        Isoelectric Point: 4.6965

>NTDB_id=887008 RSK81_RS01045 WP_315687102.1 196045..198018(-) (amiA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MRKSNILLAAGLTLLSVGLLTACSGGGSSQSSKKIYSYVFTSDPTTLDYIQSAKGSTHELTTNGVDGLLENDKYGNLAPS
IAEDWTVSPDGLVYTYKLRKDAKWYTADGEEYADVTAQDFVTGIKHAADVKSDALPLIQDSIKGLSEYAAGTNKDFSSVG
VKALDDHTVQYTLNKPETYWNSKTTSGVMMPVNEAFLEKQGKEFGQATKADSILYNGPFIMKSITSKSSVEFEKNPNYWD
KDKVKVDGVKLSYYDGSDQDSLARTFGDGGYSLARLYPATSSYFSIAEKYKDNIFMTEAGAGVGLISFNIDRQSYNHTSK
TSDEQKEATKKALLNKDFRQALAFALNRESYSAQVNGEDAAKPAVRNLFVPPTFVQANGKEFGTLVEESLASYGDEWKGI
KLDDGQDGLHNTDKAKAEFAKAKQALANEGVQFPIHLDVPVTQNSTNFVNRMQSLKQSLEEALGKDNVSVDLQMLAEDEA
LNITFNAEAASQEDWDINGLVGWEPDYQDPSTYLDILVPGNSTQTRTYLGFEDKDNAAAKAVGLDEYSKLIEEAGNETQN
VDKRYEKYAAAQAWLTDSALVVPTMSSRGAAPFISRIVPFTNSYAQTGTKDANYHKYVEISDEIVTTKDYQKAQEKWKKE
KEESNKKAQEDLAKHVK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=887008 RSK81_RS01045 WP_315687102.1 196045..198018(-) (amiA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGAGAAAATCAAATATTCTTCTTGCCGCAGGGCTCACTCTGCTCTCTGTCGGCTTACTTACAGCTTGCTCTGGAGGCGG
AAGTTCCCAATCCAGCAAAAAAATCTACAGCTATGTCTTTACGTCTGATCCAACAACTTTGGACTACATCCAGTCGGCAA
AGGGGTCTACCCACGAGCTGACTACAAATGGTGTAGATGGCTTGCTGGAAAATGATAAATATGGAAACTTAGCTCCGTCT
ATCGCAGAAGATTGGACAGTCTCTCCAGATGGTCTCGTCTATACCTATAAGCTGCGCAAAGATGCCAAGTGGTATACCGC
TGATGGCGAAGAATACGCAGATGTCACGGCTCAGGACTTTGTCACAGGTATCAAACATGCTGCTGATGTCAAATCAGACG
CTCTCCCTCTTATCCAAGATTCTATCAAGGGGCTGAGTGAATATGCAGCCGGTACCAACAAAGACTTTTCATCTGTTGGA
GTCAAGGCACTGGACGATCATACGGTTCAATATACACTCAACAAGCCTGAAACCTACTGGAACTCTAAAACAACATCAGG
TGTTATGATGCCGGTCAACGAGGCCTTCCTGGAAAAGCAAGGCAAGGAATTCGGTCAGGCAACCAAAGCCGACTCCATTC
TGTATAACGGTCCATTTATTATGAAATCCATTACTTCTAAATCCTCTGTTGAATTTGAGAAGAACCCTAACTACTGGGAT
AAGGACAAGGTCAAGGTTGATGGTGTCAAACTGTCTTACTACGATGGTTCTGACCAAGATTCATTAGCGCGGACCTTCGG
AGATGGCGGCTACAGTTTGGCAAGACTCTACCCAGCAACTTCCAGTTATTTCTCAATCGCTGAGAAATACAAAGATAATA
TCTTCATGACAGAAGCAGGAGCGGGGGTCGGTCTAATCAGCTTTAACATTGACCGTCAAAGTTATAACCATACTTCTAAA
ACCAGCGATGAACAAAAAGAAGCTACCAAAAAAGCTCTGCTGAACAAAGACTTCCGCCAAGCTCTAGCCTTTGCCCTTAA
CCGTGAAAGCTATTCGGCTCAGGTCAACGGAGAAGATGCAGCCAAGCCAGCTGTCCGTAATCTCTTTGTTCCGCCAACCT
TCGTACAAGCCAATGGCAAGGAATTTGGCACTCTTGTCGAAGAATCACTGGCTTCCTATGGTGACGAGTGGAAAGGTATC
AAGCTAGATGACGGTCAAGACGGTCTCCACAATACTGACAAAGCCAAGGCGGAATTTGCCAAAGCCAAGCAGGCTCTTGC
AAATGAAGGCGTACAATTCCCAATTCACCTAGATGTTCCTGTCACTCAGAATTCTACTAACTTCGTCAACCGTATGCAAT
CTCTGAAACAGTCATTAGAAGAGGCTTTAGGAAAGGACAATGTCTCTGTAGATCTACAGATGCTGGCTGAGGACGAAGCA
CTAAACATCACCTTCAATGCTGAAGCTGCTAGCCAGGAAGACTGGGATATCAACGGTCTCGTTGGCTGGGAGCCAGACTA
CCAAGATCCATCTACTTACCTAGACATTTTAGTCCCAGGTAACAGCACTCAGACCAGAACCTACCTTGGATTTGAAGACA
AAGACAATGCTGCTGCTAAAGCTGTAGGACTGGATGAGTACAGCAAACTGATTGAAGAGGCCGGAAACGAAACACAAAAT
GTTGACAAGCGTTATGAAAAATATGCTGCAGCTCAAGCATGGCTGACAGATAGTGCCCTCGTTGTGCCAACTATGAGCAG
CAGAGGAGCAGCACCGTTCATTTCTCGGATTGTGCCATTTACTAACTCTTATGCTCAGACAGGTACAAAAGACGCCAACT
ATCATAAATACGTGGAAATCAGTGATGAGATTGTCACAACTAAAGACTATCAAAAGGCCCAAGAAAAGTGGAAAAAAGAA
AAAGAGGAATCCAATAAAAAGGCCCAAGAAGATCTGGCTAAACATGTGAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.967

100

0.591
  amiA3 Streptococcus thermophilus LMD-9

58.118

100

0.583
  amiA3 Streptococcus thermophilus LMG 18311

57.511

100

0.577