Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RRL10_RS22325 Genome accession   NZ_CP135450
Coordinates   4621526..4622050 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii strain isolateL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4616526..4627050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRL10_RS22295 (RRL10_22295) soxR 4617391..4617849 (-) 459 WP_003031733.1 redox-sensitive transcriptional activator SoxR -
  RRL10_RS22300 (RRL10_22300) soxS 4617936..4618259 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  RRL10_RS22305 (RRL10_22305) - 4618262..4619392 (-) 1131 Protein_4376 EAL domain-containing protein -
  RRL10_RS22310 (RRL10_22310) - 4619449..4620146 (+) 698 WP_095033700.1 IS1-like element IS1B family transposase -
  RRL10_RS22315 (RRL10_22315) - 4620149..4620625 (-) 477 Protein_4378 CSS-motif domain-containing protein -
  RRL10_RS22320 (RRL10_22320) - 4621178..4621459 (+) 282 WP_044715249.1 YjcB family protein -
  RRL10_RS22325 (RRL10_22325) ssb 4621526..4622050 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RRL10_RS22330 (RRL10_22330) uvrA 4622302..4625124 (+) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  RRL10_RS22335 (RRL10_22335) - 4625240..4625596 (-) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  RRL10_RS22340 (RRL10_22340) aphA 4625724..4626437 (-) 714 WP_003826615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=886690 RRL10_RS22325 WP_003826621.1 4621526..4622050(-) (ssb) [Citrobacter freundii strain isolateL]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=886690 RRL10_RS22325 WP_003826621.1 4621526..4622050(-) (ssb) [Citrobacter freundii strain isolateL]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAATCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5