Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RRV97_RS07850 Genome accession   NZ_CP135440
Coordinates   1683629..1684516 (+) Length   295 a.a.
NCBI ID   WP_315611202.1    Uniprot ID   A0AA96NAH1
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1678629..1689516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS07840 (RRV97_07840) pilF 1680626..1682305 (+) 1680 WP_315611200.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RRV97_RS07845 (RRV97_07845) pilG 1682386..1683627 (+) 1242 WP_315611201.1 type II secretion system F family protein Machinery gene
  RRV97_RS07850 (RRV97_07850) pilD 1683629..1684516 (+) 888 WP_315611202.1 A24 family peptidase Machinery gene
  RRV97_RS07855 (RRV97_07855) coaE 1684516..1685136 (+) 621 WP_315611203.1 dephospho-CoA kinase -
  RRV97_RS07860 (RRV97_07860) yacG 1685133..1685315 (+) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  RRV97_RS07865 (RRV97_07865) glyQ 1685397..1686296 (+) 900 WP_003685919.1 glycine--tRNA ligase subunit alpha -
  RRV97_RS07870 (RRV97_07870) lspA 1686445..1686951 (+) 507 WP_049331903.1 signal peptidase II -
  RRV97_RS07875 (RRV97_07875) ispH 1686965..1687933 (+) 969 WP_049331909.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RRV97_RS07880 (RRV97_07880) ftsZ 1688053..1689252 (-) 1200 WP_003682480.1 cell division protein FtsZ -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32443.62 Da        Isoelectric Point: 7.6122

>NTDB_id=886643 RRV97_RS07850 WP_315611202.1 1683629..1684516(+) (pilD) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MLDSIYSAIDALSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSRCPK
CESPIRVWQNIPILSYVFLGGKCHACKTHISIRYPLIELLTGVLFGIVAWQYGWSWATIGGLILTAILIALTFIDADTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
MAALVGLVCALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide


Download         Length: 888 bp        

>NTDB_id=886643 RRV97_RS07850 WP_315611202.1 1683629..1684516(+) (pilD) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGCTTGATAGTATTTACTCTGCCATCGACGCCCTCTCCGTTCTTGCACCATTCGCCATTCCTTTAGCCGTTATTTTAGG
ATTACTGATTGGTAGCTTTCTGAACGTCGTCATTTATCGCACGCCGATAATGATGGAGCGTGAATGGACACAATTTTCCA
AAGAGCATTTGGGCATCGAGCTGACAGACGAAGAAAAACAGCCATTTAATCTGCGTAAACCGGATTCACGCTGCCCAAAA
TGCGAAAGTCCGATCAGAGTTTGGCAAAATATACCCATCCTCAGCTATGTTTTCCTAGGTGGGAAATGCCACGCCTGCAA
AACCCATATCAGCATACGCTATCCGTTGATTGAGCTGCTGACAGGCGTCTTATTCGGTATTGTCGCGTGGCAATACGGCT
GGTCATGGGCAACTATTGGTGGATTGATTCTGACTGCCATATTGATTGCGCTGACCTTTATCGATGCCGATACGCAATAT
TTGCCCGACAGCCTGACTCAACCCCTAATTTGGATCGGCCTGCTGTTTAATCTGAACGATACGTTCGTGCCCCTGCATTC
AGCCGTTTGGGGTGCAATCGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GTATGGGCAATGGCGACTTCAAACTTTTGGCCGCGCTCGGCGCATGGCTGGGCGTAGGAATTTTGCCTGTTCTGATCTTC
ATGGCTGCCTTAGTCGGGCTGGTGTGCGCACTCATCGCCCGCGTCGGTAAAGGCCAATATTTTGCTTTTGGTCCCAGCCT
TGCTGTAGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-132)

Type IV leader peptidase family (Peptidase_A24)

(142-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

71.378

95.932

0.685
  pilD Vibrio cholerae strain A1552

48.077

88.136

0.424
  pilD Vibrio campbellii strain DS40M4

45.091

93.22

0.42
  pilD Acinetobacter baumannii D1279779

47.41

85.085

0.403
  pilD Acinetobacter nosocomialis M2

47.41

85.085

0.403