Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RRU92_RS04310 Genome accession   NZ_CP135436
Coordinates   854609..856567 (+) Length   652 a.a.
NCBI ID   WP_315640743.1    Uniprot ID   A0AA96S3U5
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 849609..861567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS04300 (RRU92_04300) - 850703..852313 (+) 1611 WP_315640742.1 alpha-glucosidase -
  RRU92_RS04305 (RRU92_04305) amiA 852483..854450 (+) 1968 WP_075227262.1 peptide ABC transporter substrate-binding protein Regulator
  RRU92_RS04310 (RRU92_04310) amiA3 854609..856567 (+) 1959 WP_315640743.1 peptide ABC transporter substrate-binding protein Regulator
  RRU92_RS04315 (RRU92_04315) - 857058..858503 (+) 1446 WP_315640745.1 LCP family protein -
  RRU92_RS04320 (RRU92_04320) cps4B 858505..859236 (+) 732 WP_315640746.1 capsular polysaccharide biosynthesis protein Cps4B -
  RRU92_RS04325 (RRU92_04325) - 859245..859937 (+) 693 WP_315640747.1 CspC family polysaccharide chain length determinant protein -
  RRU92_RS04330 (RRU92_04330) - 859948..860622 (+) 675 WP_075231280.1 tyrosine-protein kinase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72068.81 Da        Isoelectric Point: 4.6852

>NTDB_id=886534 RRU92_RS04310 WP_315640743.1 854609..856567(+) (amiA3) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKLKKRLIGAGLTLAAAVLLTACGQSASDGKTYSSTFGADPTTFNYLLDYAGDNTAIVTNLVDGLLENDNYGNLIPALAE
DWSVSKDGLTYTYKLRQDAKWFTADGEEYAPLKAQDFVTGIKYAADNKGQALDLIQNSIKGLDDYITGANTDFSNVGVKA
LDDYNVQYTLTRPEPFWNSKTTNSILFPVNEEFLASKGKDFGTLKPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDQEKV
TIEKVKLAYFDGSDQDLTIRNFESGAYSSAGVYPNSSNFAKTKEKYKDNIVYSLQDATSWYYNFNVNRGAYNHTAKTSDE
QKQATQAAVSNKSFRQAINFAIDRTAYSAQSNGEEAAKNTLRNSLVPPTFVQVGDKTFGETVASKLVNYGTQWSNMNLED
AQDGYFNKEKAQAKFAEAKKELEAQGVSFPIHLDLPVDQVNKTLLSGTNSIKQSIESTLGSENVVVDVIQLSTDDYINAT
VQAPTPADHDYDLNLDGWSADYQDPSTYLNPFNAEDGFYLKILGLDPSKDADKITSIGLDQFTQKLKTADAENTDVAKRY
ENYADAQAWLIDSSLLIPVVSNGGGASVTRVTPFTRAYSLVGIKGTGSNYKYMRLQTDVVTSSQFAEAKAKWEQERKNSV
EKSQKDFESHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=886534 RRU92_RS04310 WP_315640743.1 854609..856567(+) (amiA3) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAACTTAAAAAACGTTTGATTGGAGCGGGGTTGACACTTGCTGCTGCGGTCCTATTGACAGCATGCGGCCAGTCAGC
ATCAGACGGCAAAACATACTCGTCTACCTTTGGTGCAGATCCAACAACCTTCAACTATCTCTTGGACTACGCTGGTGATA
ACACTGCTATTGTAACCAACTTGGTTGATGGTTTGCTTGAAAATGATAACTACGGAAACCTCATTCCTGCCCTTGCAGAG
GATTGGAGTGTTTCTAAGGATGGTTTAACTTATACCTACAAACTTCGCCAAGATGCCAAGTGGTTTACAGCTGACGGTGA
AGAATACGCTCCCCTTAAAGCACAAGACTTTGTAACTGGTATCAAGTACGCTGCTGACAACAAGGGACAAGCCTTGGACT
TGATTCAGAACTCTATCAAGGGCTTAGATGATTATATAACAGGTGCAAATACTGACTTCTCAAATGTTGGTGTCAAAGCC
TTAGATGACTATAATGTCCAATATACCTTGACACGACCAGAACCATTCTGGAACTCAAAAACAACCAACAGTATCTTATT
CCCTGTAAACGAAGAATTCCTTGCTTCTAAAGGTAAAGACTTCGGAACCCTGAAACCAGATAGCATTCTTTATAGCGGAC
CATATTTGTTAAAAGATTTTACATCTAAGTCTTCTATCGAATATGTGAAAAACCCACATTACTATGACCAAGAAAAAGTA
ACGATTGAAAAGGTAAAATTGGCCTACTTTGATGGTTCAGACCAAGACTTGACAATTCGTAACTTTGAAAGTGGTGCTTA
CTCATCTGCAGGTGTTTATCCGAATAGCTCAAACTTCGCTAAGACAAAGGAAAAATACAAGGACAATATCGTTTATAGCT
TGCAAGATGCAACATCTTGGTACTATAACTTTAACGTCAACCGTGGTGCTTATAACCATACTGCAAAAACAAGTGATGAG
CAAAAACAAGCAACTCAAGCTGCAGTTTCGAATAAAAGCTTTCGTCAGGCAATTAACTTCGCCATTGATCGTACAGCATA
CTCAGCTCAATCAAACGGTGAAGAAGCAGCTAAGAACACTCTTCGTAACTCGCTTGTACCACCAACTTTCGTACAAGTTG
GAGACAAGACTTTTGGTGAAACAGTTGCTTCCAAATTGGTCAACTATGGTACACAATGGTCAAATATGAATCTTGAAGAT
GCTCAAGATGGTTATTTCAACAAAGAAAAAGCGCAAGCTAAGTTTGCTGAAGCTAAAAAAGAATTAGAGGCCCAAGGTGT
GAGCTTCCCAATTCATTTGGACTTGCCTGTAGACCAGGTTAACAAGACCTTGCTTTCTGGAACAAACTCAATCAAACAAT
CAATCGAATCAACGCTCGGTTCTGAAAATGTAGTGGTTGATGTTATCCAATTGTCGACAGATGATTATATAAATGCAACA
GTTCAAGCACCAACTCCAGCTGATCATGACTATGATTTGAACTTGGATGGATGGTCAGCTGACTACCAAGATCCTTCAAC
TTACCTCAATCCTTTCAACGCTGAAGATGGATTCTATCTCAAGATTTTGGGACTTGATCCAAGCAAGGATGCTGATAAGA
TTACAAGTATAGGATTGGACCAATTTACTCAAAAATTAAAAACAGCAGATGCAGAAAATACAGACGTAGCGAAACGCTAT
GAAAACTACGCAGATGCACAAGCTTGGTTGATTGATAGTTCCCTTCTAATCCCAGTTGTGTCAAACGGTGGTGGGGCTTC
GGTGACACGCGTGACACCATTTACACGTGCTTACTCACTAGTTGGTATCAAAGGAACTGGAAGCAACTACAAATACATGA
GATTACAGACAGATGTTGTTACAAGCTCTCAATTTGCTGAAGCGAAGGCTAAATGGGAACAAGAACGTAAAAATTCTGTC
GAAAAGAGTCAAAAAGACTTTGAAAGTCACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.976

100

0.525
  amiA3 Streptococcus thermophilus LMG 18311

51.52

100

0.52
  amiA Streptococcus salivarius strain HSISS4

51.598

100

0.52