Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RRU92_RS04305 Genome accession   NZ_CP135436
Coordinates   852483..854450 (+) Length   655 a.a.
NCBI ID   WP_075227262.1    Uniprot ID   A0A1F0A568
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 847483..859450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS04290 (RRU92_04290) - 848611..848886 (-) 276 WP_315640740.1 hypothetical protein -
  RRU92_RS04295 (RRU92_04295) - 849066..850550 (-) 1485 WP_315640741.1 DUF1846 domain-containing protein -
  RRU92_RS04300 (RRU92_04300) - 850703..852313 (+) 1611 WP_315640742.1 alpha-glucosidase -
  RRU92_RS04305 (RRU92_04305) amiA 852483..854450 (+) 1968 WP_075227262.1 peptide ABC transporter substrate-binding protein Regulator
  RRU92_RS04310 (RRU92_04310) amiA3 854609..856567 (+) 1959 WP_315640743.1 peptide ABC transporter substrate-binding protein Regulator
  RRU92_RS04315 (RRU92_04315) - 857058..858503 (+) 1446 WP_315640745.1 LCP family protein -
  RRU92_RS04320 (RRU92_04320) cps4B 858505..859236 (+) 732 WP_315640746.1 capsular polysaccharide biosynthesis protein Cps4B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72460.03 Da        Isoelectric Point: 5.0023

>NTDB_id=886533 RRU92_RS04305 WP_075227262.1 852483..854450(+) (amiA) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKSKKWLAVAGITMSAALLLAACGKTEKKADAPTTFSYVYAIDPTTLDYSVTSKSSTSDVIANLVDGLLENDKYGNLIPS
LAEDWSVSQDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLTLIQDSIKGLAEYVSGETNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSQGKDYGAAAPSGILYNGPYILKNFTSKSVIEYEKNPNYWDK
DNVKIDHVKLTFYDGSDQESLIRSFASGSYTTARLFPTSSSFDSTKKEYGDKIVYSPQEATSYYFTFNVNRQSYNKTAKT
DDAQKTSTKEALLNKNFRQAINFALDRHAYSAQMNGEEGADKIIRTSLVPYDYVQVGEKTFGELAQEQLVTYGDQWKDVA
LTDGKDTLYNPTKAKAAFEKAKSELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSVEAALGSENVVIDVLQMTDNEKM
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITKGKDPEVMAQVGLDEYKKLLDDAASETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDIVTAKEYEEALKKWQKEKI
ETNAKYQKELANHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=886533 RRU92_RS04305 WP_075227262.1 852483..854450(+) (amiA) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAATCGAAAAAGTGGCTCGCAGTAGCAGGGATAACGATGAGCGCAGCTCTTCTTTTGGCGGCTTGTGGCAAGACTGA
GAAAAAAGCAGATGCTCCAACAACATTTTCGTATGTTTATGCTATTGATCCAACAACTTTGGACTATAGCGTTACTAGTA
AAAGTTCAACATCAGATGTCATCGCCAACCTGGTCGACGGACTCTTGGAGAATGACAAATATGGAAACTTGATTCCATCG
CTTGCTGAAGACTGGTCTGTTTCACAGGACGGTTTGACTTACACATACAAGCTACGTAAAGGTGTCAAATGGTATACTTC
TGAAGGAGAAGAGTATGCTGAAGTCAAGGCCCAAGACTTTGTGACTGGTTTGAAACATGCTGCTGATGGTAAGTCAGATG
GTCTAACACTTATCCAAGACTCCATCAAAGGATTGGCAGAGTACGTTAGCGGTGAAACGAATGACTTCTCAACAGTCGGT
GTCAAAGCAGTTGATGACTATACGGTTGAGTATACCTTGAACAAACCAGAAAGCTTCTGGAATTCTAAGGTAACAACAGC
AACCATGCTCCCAGTTAATGAAGAATTCTTAAATTCTCAAGGGAAAGATTACGGTGCAGCAGCGCCTTCAGGTATTCTCT
ACAATGGTCCTTATATTTTGAAGAACTTCACTTCGAAATCCGTGATCGAGTACGAAAAGAACCCGAATTACTGGGACAAG
GACAATGTTAAGATTGACCACGTCAAGCTTACTTTCTACGACGGCTCTGACCAAGAATCATTGATTCGTAGCTTTGCGTC
AGGCTCATATACGACAGCTCGCCTCTTCCCAACTAGCTCAAGCTTTGATTCAACTAAGAAAGAATACGGCGATAAGATCG
TTTATAGTCCACAAGAAGCCACTAGCTATTACTTTACTTTCAACGTAAATCGTCAGTCTTACAATAAAACAGCTAAGACA
GATGATGCCCAAAAAACATCAACTAAAGAAGCGCTTCTTAATAAAAACTTCCGTCAAGCCATCAACTTCGCTCTTGACCG
TCATGCTTACTCTGCACAGATGAATGGCGAAGAAGGTGCAGACAAGATTATCCGTACCAGCCTTGTGCCTTATGACTATG
TTCAGGTTGGTGAAAAGACCTTCGGTGAATTGGCTCAAGAACAATTGGTAACATACGGAGACCAGTGGAAGGATGTGGCT
TTGACAGATGGTAAAGATACCCTTTACAATCCAACAAAAGCAAAAGCTGCCTTTGAAAAAGCAAAATCAGAATTGCAGGC
TAAAGGTGTAACCTTCCCAATCCATTTGGATATTCCAGTTGAGCAGACTGATGTCATTGCTGTACAGCAAACCAACTCTC
TCAAACAGTCTGTCGAAGCAGCACTTGGAAGTGAGAATGTTGTCATCGATGTACTTCAAATGACTGACAATGAGAAAATG
AGTATCACATCTCAAGCCAAAGTGCCTTCTCAAAAAGACTATGACTTGAACGGAACTGGATGGGGACCAGACTATCAAGA
CCCAGCAACCTACCTCAATATCTTAGATGCTAAGAAGGGTTCTGCTCTTAAACACTTGGGTATCACAAAAGGTAAAGATC
CAGAAGTTATGGCTCAAGTTGGACTTGATGAGTACAAGAAACTCTTGGATGATGCAGCATCAGAAACAAGCGATCTTAAC
AAACGCTATGAAAAATATGCCAAAGCACAAGCTTGGGTTTCAGATAGTTCACTTCTTATCCCTGTAGCTTCTTCAGGTGG
TTCTCCGACAGTTAGTCGTACAGTGCCATTCACAAAAGCTTACTCTCAAGTTGGTATCAAGGGAGATCCATTTGTATTTA
AAGGTTTAGAATTACAAAACGATATTGTAACAGCTAAAGAATACGAAGAAGCTCTCAAGAAATGGCAAAAAGAGAAAATT
GAAACGAATGCCAAATACCAAAAAGAACTAGCAAATCACGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F0A568

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.863

100

0.551
  amiA3 Streptococcus thermophilus LMD-9

53.718

100

0.54
  amiA3 Streptococcus thermophilus LMG 18311

53.263

100

0.536