Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RRP28_RS25325 Genome accession   NZ_CP135285
Coordinates   5659653..5660222 (-) Length   189 a.a.
NCBI ID   WP_003426596.1    Uniprot ID   A0A0K8M6E3
Organism   Pseudomonas syringae pv. actinidiae strain Yunnan2.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5654653..5665222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRP28_RS25300 (RRP28_25300) - 5655503..5656396 (+) 894 WP_003379184.1 ABC transporter permease subunit -
  RRP28_RS25305 (RRP28_25305) - 5656393..5657499 (+) 1107 WP_003379187.1 ABC transporter ATP-binding protein -
  RRP28_RS25310 (RRP28_25310) - 5657506..5658267 (+) 762 WP_003379189.1 glycerophosphoryl diester phosphodiesterase -
  RRP28_RS25315 (RRP28_25315) - 5658264..5659007 (+) 744 WP_003379192.1 inositol monophosphatase family protein -
  RRP28_RS25320 (RRP28_25320) - 5659130..5659429 (+) 300 WP_003379193.1 hypothetical protein -
  RRP28_RS25325 (RRP28_25325) ssb 5659653..5660222 (-) 570 WP_003426596.1 single-stranded DNA-binding protein Machinery gene
  RRP28_RS25330 (RRP28_25330) - 5660232..5661626 (-) 1395 WP_004397022.1 MFS transporter -
  RRP28_RS25335 (RRP28_25335) uvrA 5661756..5664590 (+) 2835 WP_005614297.1 excinuclease ABC subunit UvrA -
  RRP28_RS25340 (RRP28_25340) bfr 5664684..5665148 (-) 465 WP_004397024.1 bacterioferritin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20974.10 Da        Isoelectric Point: 5.9404

>NTDB_id=886443 RRP28_RS25325 WP_003426596.1 5659653..5660222(-) (ssb) [Pseudomonas syringae pv. actinidiae strain Yunnan2.4]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=886443 RRP28_RS25325 WP_003426596.1 5659653..5660222(-) (ssb) [Pseudomonas syringae pv. actinidiae strain Yunnan2.4]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCTGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K8M6E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.561
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.476
  ssb Neisseria meningitidis MC58

44.681

99.471

0.444
  ssb Neisseria gonorrhoeae MS11

44.681

99.471

0.444