Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RQR14_RS05720 | Genome accession | NZ_CP135196 |
| Coordinates | 1170554..1171006 (-) | Length | 150 a.a. |
| NCBI ID | WP_078801814.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain 80176 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1167491..1213834 | 1170554..1171006 | within | 0 |
Gene organization within MGE regions
Location: 1167491..1213834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RQR14_RS05690 | - | 1167491..1168480 (+) | 990 | WP_139617332.1 | site-specific integrase | - |
| RQR14_RS05695 | - | 1168477..1168758 (-) | 282 | WP_047918098.1 | hypothetical protein | - |
| RQR14_RS05700 | - | 1168797..1169093 (-) | 297 | WP_139617331.1 | hypothetical protein | - |
| RQR14_RS05705 | - | 1169098..1169541 (-) | 444 | WP_315557833.1 | pyruvate kinase | - |
| RQR14_RS05710 | - | 1169626..1169979 (-) | 354 | WP_315557834.1 | hypothetical protein | - |
| RQR14_RS05715 | - | 1169988..1170485 (-) | 498 | WP_252759419.1 | DUF551 domain-containing protein | - |
| RQR14_RS05720 | ssb | 1170554..1171006 (-) | 453 | WP_078801814.1 | single-stranded DNA-binding protein | Machinery gene |
| RQR14_RS05725 | - | 1171006..1171680 (-) | 675 | WP_015691053.1 | translocation protein TolB precursor | - |
| RQR14_RS05730 | - | 1171652..1172605 (-) | 954 | WP_014391451.1 | recombinase RecT | - |
| RQR14_RS05735 | - | 1172607..1172894 (-) | 288 | WP_014391452.1 | hypothetical protein | - |
| RQR14_RS05740 | - | 1172907..1173143 (-) | 237 | WP_078801815.1 | hypothetical protein | - |
| RQR14_RS05745 | - | 1173115..1173414 (-) | 300 | WP_315557835.1 | hypothetical protein | - |
| RQR14_RS05750 | - | 1173562..1173792 (+) | 231 | WP_223251317.1 | hypothetical protein | - |
| RQR14_RS05755 | - | 1173853..1174539 (-) | 687 | WP_136690207.1 | Bro-N domain-containing protein | - |
| RQR14_RS05760 | - | 1174883..1175008 (+) | 126 | WP_014391103.1 | hypothetical protein | - |
| RQR14_RS05765 | - | 1175009..1175542 (-) | 534 | WP_014391102.1 | hypothetical protein | - |
| RQR14_RS05770 | - | 1175630..1175893 (-) | 264 | WP_014391101.1 | hypothetical protein | - |
| RQR14_RS05775 | - | 1175982..1176359 (-) | 378 | WP_014390713.1 | hypothetical protein | - |
| RQR14_RS05780 | - | 1176334..1176525 (-) | 192 | WP_014391100.1 | hypothetical protein | - |
| RQR14_RS05785 | - | 1176978..1177268 (-) | 291 | WP_276239969.1 | hypothetical protein | - |
| RQR14_RS05790 | - | 1177575..1177775 (-) | 201 | WP_193628062.1 | hypothetical protein | - |
| RQR14_RS05795 | - | 1178058..1178357 (+) | 300 | WP_078802155.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| RQR14_RS05800 | - | 1178359..1178655 (+) | 297 | WP_193628063.1 | addiction module antidote protein | - |
| RQR14_RS05805 | - | 1178749..1179405 (-) | 657 | WP_193628064.1 | LexA family transcriptional regulator | - |
| RQR14_RS05810 | - | 1179535..1179741 (+) | 207 | WP_193628065.1 | helix-turn-helix transcriptional regulator | - |
| RQR14_RS05815 | - | 1179790..1180242 (+) | 453 | WP_102822910.1 | phage regulatory CII family protein | - |
| RQR14_RS05820 | - | 1180245..1180442 (+) | 198 | WP_071523829.1 | hypothetical protein | - |
| RQR14_RS05825 | - | 1180494..1181177 (+) | 684 | WP_315557836.1 | phage antirepressor KilAC domain-containing protein | - |
| RQR14_RS05830 | - | 1181262..1182080 (+) | 819 | WP_015691057.1 | hypothetical protein | - |
| RQR14_RS05835 | - | 1182077..1183441 (+) | 1365 | WP_015691058.1 | replicative DNA helicase | - |
| RQR14_RS05840 | - | 1183438..1183977 (+) | 540 | WP_250011983.1 | MT-A70 family methyltransferase | - |
| RQR14_RS05845 | - | 1183986..1184423 (+) | 438 | WP_014390726.1 | DUF1367 family protein | - |
| RQR14_RS05850 | - | 1184583..1184798 (+) | 216 | WP_014667790.1 | hypothetical protein | - |
| RQR14_RS05855 | - | 1184791..1185393 (+) | 603 | WP_014667791.1 | recombination protein NinG | - |
| RQR14_RS05860 | - | 1185394..1185855 (+) | 462 | WP_014667792.1 | antiterminator Q family protein | - |
| RQR14_RS05865 | - | 1185981..1186544 (-) | 564 | WP_014667793.1 | hypothetical protein | - |
| RQR14_RS05870 | - | 1186662..1186922 (+) | 261 | WP_014391475.1 | HP1 family phage holin | - |
| RQR14_RS05875 | - | 1186919..1187449 (+) | 531 | WP_014667794.1 | lysozyme | - |
| RQR14_RS05880 | - | 1187422..1187745 (+) | 324 | WP_014667795.1 | DUF2570 family protein | - |
| RQR14_RS05885 | tnpA | 1188037..1188453 (-) | 417 | WP_005720092.1 | IS200/IS605 family transposase | - |
| RQR14_RS05890 | - | 1188500..1189636 (+) | 1137 | WP_064775610.1 | RNA-guided endonuclease TnpB family protein | - |
| RQR14_RS05895 | - | 1189776..1190144 (-) | 369 | WP_005621567.1 | helix-turn-helix transcriptional regulator | - |
| RQR14_RS05900 | - | 1190180..1190440 (-) | 261 | WP_071523520.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| RQR14_RS05905 | - | 1190731..1191207 (+) | 477 | WP_315557837.1 | DUF1441 family protein | - |
| RQR14_RS05910 | - | 1191210..1193318 (+) | 2109 | WP_315557838.1 | phage terminase large subunit family protein | - |
| RQR14_RS05915 | - | 1193315..1193536 (+) | 222 | WP_315557839.1 | hypothetical protein | - |
| RQR14_RS05920 | - | 1193533..1195074 (+) | 1542 | WP_315557840.1 | phage portal protein | - |
| RQR14_RS05925 | - | 1195007..1197016 (+) | 2010 | WP_315557841.1 | ClpP-like prohead protease/major capsid protein fusion protein | - |
| RQR14_RS05930 | - | 1197088..1197414 (+) | 327 | WP_016570083.1 | DUF2190 family protein | - |
| RQR14_RS05935 | - | 1197407..1197700 (+) | 294 | WP_014391484.1 | hypothetical protein | - |
| RQR14_RS05940 | - | 1197700..1198251 (+) | 552 | WP_315557842.1 | phage tail protein | - |
| RQR14_RS05945 | - | 1198248..1198655 (+) | 408 | WP_223131948.1 | phage minor tail U family protein | - |
| RQR14_RS11865 | - | 1198699..1198761 (+) | 63 | WP_392391890.1 | hypothetical protein | - |
| RQR14_RS05950 | - | 1198748..1199161 (+) | 414 | WP_392391891.1 | phage tail tube protein | - |
| RQR14_RS05955 | - | 1199164..1199553 (+) | 390 | WP_071171120.1 | phage minor tail protein G | - |
| RQR14_RS05960 | - | 1199574..1199876 (+) | 303 | WP_315557849.1 | phage tail assembly protein T | - |
| RQR14_RS05965 | - | 1199863..1202016 (+) | 2154 | WP_315557844.1 | phage tail length tape measure family protein | - |
| RQR14_RS05970 | - | 1202013..1202363 (+) | 351 | WP_005719622.1 | phage tail protein | - |
| RQR14_RS05975 | - | 1202742..1203446 (+) | 705 | WP_315557845.1 | phage minor tail protein L | - |
| RQR14_RS05980 | - | 1203451..1204194 (+) | 744 | WP_170460619.1 | C40 family peptidase | - |
| RQR14_RS05985 | - | 1204137..1204757 (+) | 621 | WP_064964934.1 | tail assembly protein | - |
| RQR14_RS05990 | - | 1204761..1209821 (+) | 5061 | WP_315557846.1 | phage tail protein | - |
| RQR14_RS05995 | - | 1209866..1210189 (+) | 324 | WP_014390761.1 | hypothetical protein | - |
| RQR14_RS06000 | - | 1210318..1211358 (+) | 1041 | WP_005720395.1 | IS481 family transposase | - |
| RQR14_RS06005 | - | 1211697..1212917 (-) | 1221 | WP_064965051.1 | hypothetical protein | - |
| RQR14_RS06010 | - | 1212969..1213289 (-) | 321 | WP_064965052.1 | hypothetical protein | - |
| RQR14_RS11870 | - | 1213444..1213659 (-) | 216 | WP_081274327.1 | ribbon-helix-helix protein, CopG family | - |
| RQR14_RS06015 | - | 1213634..1213834 (-) | 201 | WP_064965054.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17107.99 Da Isoelectric Point: 7.9707
>NTDB_id=886164 RQR14_RS05720 WP_078801814.1 1170554..1171006(-) (ssb) [Pasteurella multocida strain 80176]
MAGVNRVIILGNLGSDPEIRTMPNGDPVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
KLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKAGKPVQQQAYNFEEDNIPF
MAGVNRVIILGNLGSDPEIRTMPNGDPVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
KLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKAGKPVQQQAYNFEEDNIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=886164 RQR14_RS05720 WP_078801814.1 1170554..1171006(-) (ssb) [Pasteurella multocida strain 80176]
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAGCGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTGGCAAAAATCAGTGTGGCCACAAGTGAAAGCTGGATTGATAAAAACACAAACGAACGAAAAACGCAGACAGAATGGC
ACTCTATCGTGTTTTATCGCCGCCAAGCAGAAATTTGTGGGCAGTATTTGAAGAAAGGCTCGAAAGTTTATGTGGAAGGT
AAGCTCAGAACACGCAAATGGCAAGATCAAAATGGTCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAGCTGGAA
AGCCTGTACAGCAACAAGCATATAACTTTGAAGAGGATAATATCCCATTCTGA
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAGCGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTGGCAAAAATCAGTGTGGCCACAAGTGAAAGCTGGATTGATAAAAACACAAACGAACGAAAAACGCAGACAGAATGGC
ACTCTATCGTGTTTTATCGCCGCCAAGCAGAAATTTGTGGGCAGTATTTGAAGAAAGGCTCGAAAGTTTATGTGGAAGGT
AAGCTCAGAACACGCAAATGGCAAGATCAAAATGGTCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAGCTGGAA
AGCCTGTACAGCAACAAGCATATAACTTTGAAGAGGATAATATCCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
60.556 |
100 |
0.727 |
| ssb | Vibrio cholerae strain A1552 |
52.518 |
92.667 |
0.487 |
| ssb | Neisseria gonorrhoeae MS11 |
44.526 |
91.333 |
0.407 |
| ssb | Neisseria meningitidis MC58 |
44.526 |
91.333 |
0.407 |