Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RQR13_RS04320 | Genome accession | NZ_CP135194 |
| Coordinates | 860238..860738 (-) | Length | 166 a.a. |
| NCBI ID | WP_005725039.1 | Uniprot ID | A0A379BD60 |
| Organism | Pasteurella multocida strain 102426 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 813909..867597 | 860238..860738 | within | 0 |
Gene organization within MGE regions
Location: 813909..867597
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RQR13_RS03990 | - | 813909..814328 (-) | 420 | WP_005719426.1 | DUF417 family protein | - |
| RQR13_RS03995 | - | 814667..815482 (-) | 816 | WP_240961993.1 | tape measure protein | - |
| RQR13_RS04000 | - | 815500..815826 (-) | 327 | WP_015691082.1 | phage tail protein | - |
| RQR13_RS04005 | - | 815834..816163 (-) | 330 | WP_015691081.1 | hypothetical protein | - |
| RQR13_RS04010 | - | 816172..816576 (-) | 405 | WP_005756587.1 | hypothetical protein | - |
| RQR13_RS04015 | - | 816650..817666 (-) | 1017 | WP_064964909.1 | phage tail tube protein | - |
| RQR13_RS04020 | - | 817679..818074 (-) | 396 | WP_064964910.1 | phage tail terminator-like protein | - |
| RQR13_RS04025 | - | 818074..818475 (-) | 402 | WP_064964911.1 | HK97 gp10 family phage protein | - |
| RQR13_RS04030 | - | 818477..818851 (-) | 375 | WP_064964912.1 | hypothetical protein | - |
| RQR13_RS04035 | - | 818853..819320 (-) | 468 | WP_064964913.1 | DnaT-like ssDNA-binding protein | - |
| RQR13_RS04040 | - | 819337..819573 (-) | 237 | WP_064964914.1 | HeH/LEM domain-containing protein | - |
| RQR13_RS04045 | - | 819630..820787 (-) | 1158 | WP_075271385.1 | P22 phage major capsid protein family protein | - |
| RQR13_RS04050 | - | 820805..821590 (-) | 786 | WP_079157868.1 | hypothetical protein | - |
| RQR13_RS04055 | - | 821766..822164 (-) | 399 | WP_079157867.1 | hypothetical protein | - |
| RQR13_RS04060 | - | 822201..822635 (-) | 435 | WP_064965033.1 | HD domain-containing protein | - |
| RQR13_RS04065 | - | 822610..822828 (-) | 219 | WP_079157866.1 | hypothetical protein | - |
| RQR13_RS04070 | - | 822831..824432 (-) | 1602 | WP_079157879.1 | minor capsid protein | - |
| RQR13_RS04075 | - | 824422..825825 (-) | 1404 | WP_064964917.1 | DUF4055 domain-containing protein | - |
| RQR13_RS04080 | - | 825835..827070 (-) | 1236 | WP_064964918.1 | PBSX family phage terminase large subunit | - |
| RQR13_RS04085 | - | 827054..827551 (-) | 498 | WP_014390737.1 | terminase | - |
| RQR13_RS04090 | - | 827634..827816 (+) | 183 | WP_016533497.1 | type II toxin-antitoxin system HicA family toxin | - |
| RQR13_RS04095 | - | 827845..828279 (+) | 435 | WP_046338366.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| RQR13_RS04100 | - | 828501..828824 (-) | 324 | WP_079157976.1 | DUF2570 family protein | - |
| RQR13_RS04105 | - | 828797..829327 (-) | 531 | WP_069915984.1 | lysozyme | - |
| RQR13_RS04110 | - | 829324..829581 (-) | 258 | WP_099821837.1 | phage holin | - |
| RQR13_RS04115 | - | 829959..830174 (+) | 216 | WP_015691066.1 | hypothetical protein | - |
| RQR13_RS04120 | - | 830383..831000 (-) | 618 | WP_014390731.1 | KilA-N domain-containing protein | - |
| RQR13_RS04125 | - | 831288..831863 (-) | 576 | WP_014390730.1 | hypothetical protein | - |
| RQR13_RS04130 | - | 831939..832304 (-) | 366 | WP_014390729.1 | antiterminator Q family protein | - |
| RQR13_RS04135 | - | 832304..832906 (-) | 603 | WP_315504313.1 | recombination protein NinG | - |
| RQR13_RS04140 | - | 832899..833114 (-) | 216 | WP_252759495.1 | hypothetical protein | - |
| RQR13_RS04145 | - | 833188..833613 (-) | 426 | WP_250023941.1 | recombination protein NinB | - |
| RQR13_RS04150 | - | 833603..834139 (-) | 537 | WP_315505467.1 | phage N-6-adenine-methyltransferase | - |
| RQR13_RS04155 | - | 834143..835582 (-) | 1440 | WP_315505469.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| RQR13_RS04160 | - | 835582..836421 (-) | 840 | WP_071523827.1 | DNA replication protein | - |
| RQR13_RS04165 | - | 836506..837189 (-) | 684 | WP_014390721.1 | phage antirepressor KilAC domain-containing protein | - |
| RQR13_RS04170 | - | 837241..837693 (-) | 453 | WP_014391466.1 | phage regulatory CII family protein | - |
| RQR13_RS04175 | - | 837742..837951 (-) | 210 | WP_005720263.1 | helix-turn-helix transcriptional regulator | - |
| RQR13_RS04180 | - | 838079..838765 (+) | 687 | WP_014391464.1 | XRE family transcriptional regulator | - |
| RQR13_RS04185 | - | 838841..839578 (+) | 738 | WP_014390717.1 | HipA family kinase | - |
| RQR13_RS04190 | - | 839575..840399 (+) | 825 | WP_014390716.1 | DUF3037 domain-containing protein | - |
| RQR13_RS04195 | - | 840907..841134 (+) | 228 | WP_014390715.1 | hypothetical protein | - |
| RQR13_RS04200 | - | 841473..842297 (+) | 825 | WP_015691055.1 | NYN domain-containing protein | - |
| RQR13_RS04205 | - | 842406..842636 (-) | 231 | WP_223251317.1 | hypothetical protein | - |
| RQR13_RS04210 | - | 842784..843083 (+) | 300 | WP_014390709.1 | hypothetical protein | - |
| RQR13_RS04215 | - | 843055..843291 (+) | 237 | WP_014667786.1 | hypothetical protein | - |
| RQR13_RS04220 | - | 843305..843466 (+) | 162 | WP_014390707.1 | hypothetical protein | - |
| RQR13_RS04225 | - | 843639..844289 (+) | 651 | WP_014390705.1 | ribonuclease H-like domain-containing protein | - |
| RQR13_RS04230 | - | 844332..845033 (+) | 702 | WP_014390704.1 | ERF family protein | - |
| RQR13_RS04235 | ssb | 845044..845496 (+) | 453 | WP_014390703.1 | single-stranded DNA-binding protein | Machinery gene |
| RQR13_RS04240 | - | 845563..846084 (+) | 522 | WP_014390702.1 | MazG-like family protein | - |
| RQR13_RS04245 | - | 846084..846395 (+) | 312 | WP_014390701.1 | DUF6378 domain-containing protein | - |
| RQR13_RS04250 | - | 846474..846857 (+) | 384 | WP_014390700.1 | hypothetical protein | - |
| RQR13_RS04255 | rdgC | 846860..847762 (+) | 903 | WP_014390699.1 | recombination-associated protein RdgC | - |
| RQR13_RS04260 | - | 847803..848291 (+) | 489 | WP_014390698.1 | DUF551 domain-containing protein | - |
| RQR13_RS04265 | - | 848300..848656 (+) | 357 | WP_015691049.1 | hypothetical protein | - |
| RQR13_RS04270 | - | 848760..849668 (+) | 909 | WP_015691048.1 | P63C domain-containing protein | - |
| RQR13_RS04275 | - | 849913..850134 (+) | 222 | WP_064775645.1 | hypothetical protein | - |
| RQR13_RS04280 | - | 850145..850867 (+) | 723 | WP_064964854.1 | phage antirepressor KilAC domain-containing protein | - |
| RQR13_RS04285 | - | 851051..851353 (+) | 303 | WP_075271365.1 | helix-turn-helix domain-containing protein | - |
| RQR13_RS04290 | - | 851257..852312 (+) | 1056 | WP_014391441.1 | site-specific integrase | - |
| RQR13_RS04305 | folD | 852687..853541 (+) | 855 | WP_014391440.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| RQR13_RS04310 | - | 853557..853937 (+) | 381 | WP_014391439.1 | hypothetical protein | - |
| RQR13_RS04315 | - | 854719..858888 (-) | 4170 | WP_099821844.1 | NACHT domain-containing NTPase | - |
| RQR13_RS04320 | ssb | 860238..860738 (-) | 501 | WP_005725039.1 | single-stranded DNA-binding protein | Machinery gene |
| RQR13_RS04325 | uvrA | 860910..863741 (+) | 2832 | WP_014391437.1 | excinuclease ABC subunit UvrA | - |
| RQR13_RS04330 | sodC | 863812..864372 (+) | 561 | WP_014391436.1 | superoxide dismutase family protein | - |
| RQR13_RS04335 | rlmB | 864458..865195 (-) | 738 | WP_005725044.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| RQR13_RS04340 | rnr | 865270..867597 (-) | 2328 | WP_014391435.1 | ribonuclease R | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18657.68 Da Isoelectric Point: 5.3353
>NTDB_id=886135 RQR13_RS04320 WP_005725039.1 860238..860738(-) (ssb) [Pasteurella multocida strain 102426]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=886135 RQR13_RS04320 WP_005725039.1 860238..860738(-) (ssb) [Pasteurella multocida strain 102426]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
69.231 |
100 |
0.759 |
| ssb | Vibrio cholerae strain A1552 |
53.591 |
100 |
0.584 |
| ssb | Neisseria meningitidis MC58 |
44.068 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
44.068 |
100 |
0.47 |