Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RJD11_RS21355 Genome accession   NZ_CP135184
Coordinates   4197832..4198350 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain NDB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4192832..4203350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD11_RS21325 (RJD11_21325) - 4194031..4194411 (-) 381 WP_315563667.1 VOC family protein -
  RJD11_RS21330 (RJD11_21330) - 4194463..4195407 (-) 945 WP_007409892.1 LacI family DNA-binding transcriptional regulator -
  RJD11_RS21335 (RJD11_21335) xth 4195470..4196228 (-) 759 WP_167340973.1 exodeoxyribonuclease III -
  RJD11_RS21340 (RJD11_21340) - 4196225..4196782 (-) 558 WP_032870836.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RJD11_RS21345 (RJD11_21345) - 4196779..4197360 (-) 582 WP_020958118.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  RJD11_RS21350 (RJD11_21350) rpsR 4197549..4197788 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  RJD11_RS21355 (RJD11_21355) ssbA 4197832..4198350 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  RJD11_RS21360 (RJD11_21360) rpsF 4198390..4198677 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  RJD11_RS21365 (RJD11_21365) ychF 4198789..4199889 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  RJD11_RS21370 (RJD11_21370) - 4200015..4202018 (-) 2004 WP_167340974.1 molybdopterin-dependent oxidoreductase -
  RJD11_RS21375 (RJD11_21375) - 4202065..4202271 (-) 207 WP_012118942.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=886078 RJD11_RS21355 WP_004392979.1 4197832..4198350(-) (ssbA) [Bacillus velezensis strain NDB]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=886078 RJD11_RS21355 WP_004392979.1 4197832..4198350(-) (ssbA) [Bacillus velezensis strain NDB]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAATAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378