Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYQ95_RS13370 Genome accession   NZ_CP135176
Coordinates   3005785..3006339 (-) Length   184 a.a.
NCBI ID   WP_016800599.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus ZF270     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3000785..3011339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ95_RS13350 (QYQ95_13350) - 3001191..3001523 (-) 333 WP_016788320.1 MSHA biogenesis protein MshK -
  QYQ95_RS13355 (QYQ95_13355) pilO 3001516..3002163 (-) 648 WP_010434330.1 type 4a pilus biogenesis protein PilO -
  QYQ95_RS13360 (QYQ95_13360) - 3002163..3003605 (-) 1443 WP_010434328.1 MSHA biogenesis protein MshI -
  QYQ95_RS13365 (QYQ95_13365) csrD 3003608..3005623 (-) 2016 WP_016795712.1 RNase E specificity factor CsrD -
  QYQ95_RS13370 (QYQ95_13370) ssb 3005785..3006339 (-) 555 WP_016800599.1 single-stranded DNA-binding protein Machinery gene
  QYQ95_RS13375 (QYQ95_13375) qstR 3006618..3007265 (+) 648 WP_016767798.1 LuxR C-terminal-related transcriptional regulator Regulator
  QYQ95_RS13380 (QYQ95_13380) galU 3007423..3008295 (+) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QYQ95_RS13385 (QYQ95_13385) uvrA 3008479..3011310 (+) 2832 WP_016788322.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20271.45 Da        Isoelectric Point: 5.2358

>NTDB_id=885989 QYQ95_RS13370 WP_016800599.1 3005785..3006339(-) (ssb) [Vibrio cyclitrophicus ZF270]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQLPKAP
QQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=885989 QYQ95_RS13370 WP_016800599.1 3005785..3006339(-) (ssb) [Vibrio cyclitrophicus ZF270]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGGTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAATACAGTGCTCCTGCTCAACAGCTGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.72

100

0.826
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.582
  ssb Neisseria meningitidis MC58

47.826

100

0.478
  ssb Neisseria gonorrhoeae MS11

47.826

100

0.478