Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   RQL82_RS01520 Genome accession   NZ_CP135159
Coordinates   321993..322772 (+) Length   259 a.a.
NCBI ID   WP_039765193.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AR3651     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316993..327772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL82_RS01505 (RQL82_01510) ponA 317574..320135 (-) 2562 WP_329760165.1 penicillin-binding protein PBP1a -
  RQL82_RS01510 (RQL82_01515) pilM 320297..321355 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  RQL82_RS01515 (RQL82_01520) pilN 321355..321996 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  RQL82_RS01520 (RQL82_01525) pilO 321993..322772 (+) 780 WP_039765193.1 type 4a pilus biogenesis protein PilO Machinery gene
  RQL82_RS01525 (RQL82_01530) pilP 322784..323311 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  RQL82_RS01530 (RQL82_01535) pilQ 323374..325500 (+) 2127 WP_039765195.1 type IV pilus secretin PilQ Machinery gene
  RQL82_RS01535 (RQL82_01540) aroK 325512..326081 (+) 570 WP_039765198.1 shikimate kinase AroK -
  RQL82_RS01540 (RQL82_01545) aroB 326110..327192 (+) 1083 WP_005067096.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29465.57 Da        Isoelectric Point: 5.7424

>NTDB_id=885720 RQL82_RS01520 WP_039765193.1 321993..322772(+) (pilO) [Acinetobacter pittii strain AR3651]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQTNFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFVVDAAPIKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNVHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=885720 RQL82_RS01520 WP_039765193.1 321993..322772(+) (pilO) [Acinetobacter pittii strain AR3651]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTACGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TTTTTGCTGTATTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAGGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAACCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
AATGCATGATTTTGTTGTTGACGCTGCTCCTATTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGTGCGGTTGAAAACCAAAATAATAGTGATCCTCAAGTGATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGTACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.732

86.486

0.776
  comO Acinetobacter baylyi ADP1

71.245

89.961

0.641