Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RQL82_RS01515 Genome accession   NZ_CP135159
Coordinates   321355..321996 (+) Length   213 a.a.
NCBI ID   WP_032004890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AR3651     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316355..326996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL82_RS01495 (RQL82_01500) - 316400..316732 (+) 333 WP_002116981.1 DUF7709 family protein -
  RQL82_RS01500 (RQL82_01505) rrmA 316735..317559 (+) 825 WP_202732992.1 putative RNA methyltransferase -
  RQL82_RS01505 (RQL82_01510) ponA 317574..320135 (-) 2562 WP_329760165.1 penicillin-binding protein PBP1a -
  RQL82_RS01510 (RQL82_01515) pilM 320297..321355 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  RQL82_RS01515 (RQL82_01520) pilN 321355..321996 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  RQL82_RS01520 (RQL82_01525) pilO 321993..322772 (+) 780 WP_039765193.1 type 4a pilus biogenesis protein PilO Machinery gene
  RQL82_RS01525 (RQL82_01530) pilP 322784..323311 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  RQL82_RS01530 (RQL82_01535) pilQ 323374..325500 (+) 2127 WP_039765195.1 type IV pilus secretin PilQ Machinery gene
  RQL82_RS01535 (RQL82_01540) aroK 325512..326081 (+) 570 WP_039765198.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23907.33 Da        Isoelectric Point: 5.4186

>NTDB_id=885719 RQL82_RS01515 WP_032004890.1 321355..321996(+) (pilN) [Acinetobacter pittii strain AR3651]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=885719 RQL82_RS01515 WP_032004890.1 321355..321996(+) (pilN) [Acinetobacter pittii strain AR3651]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGATGCA
ATTATTGAGCGCATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCAGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACTCCAGCAGCCATGTATTTGACTAAATTCAGCCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685