Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RQL82_RS01010 Genome accession   NZ_CP135159
Coordinates   229426..230013 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AR3651     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 224426..235013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL82_RS00985 (RQL82_00990) - 224495..225301 (-) 807 WP_127493548.1 SDR family NAD(P)-dependent oxidoreductase -
  RQL82_RS00990 (RQL82_00995) - 225404..225775 (-) 372 WP_311084373.1 MerR family transcriptional regulator -
  RQL82_RS00995 (RQL82_01000) tenA 225842..226516 (-) 675 WP_005044207.1 thiaminase II -
  RQL82_RS01000 (RQL82_01005) - 226780..227862 (+) 1083 WP_311084372.1 DUF475 domain-containing protein -
  RQL82_RS01005 (RQL82_01010) yajR 228010..229374 (+) 1365 WP_329760130.1 MFS transporter -
  RQL82_RS01010 (RQL82_01015) ssb 229426..230013 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  RQL82_RS01015 (RQL82_01020) - 230054..230377 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  RQL82_RS01020 (RQL82_01025) - 230374..231069 (-) 696 WP_329760131.1 AzlC family ABC transporter permease -
  RQL82_RS01025 (RQL82_01030) ydcN 231138..231686 (+) 549 WP_329760132.1 XRE family transcriptional regulator -
  RQL82_RS01030 (RQL82_01035) - 231992..233434 (+) 1443 WP_002117418.1 amino acid permease -
  RQL82_RS01035 (RQL82_01040) - 233500..234999 (-) 1500 WP_025469774.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=885717 RQL82_RS01010 WP_005066890.1 229426..230013(+) (ssb) [Acinetobacter pittii strain AR3651]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=885717 RQL82_RS01010 WP_005066890.1 229426..230013(+) (ssb) [Acinetobacter pittii strain AR3651]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACGCGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATTCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCTCCTAAAGCGCCACAACAACCGGCTTCTGCACCAGC
TGACTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385