Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   RQL83_RS17200 Genome accession   NZ_CP135151
Coordinates   3562660..3563793 (+) Length   377 a.a.
NCBI ID   WP_106389284.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AR3676     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3557660..3568793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL83_RS17175 (RQL83_17235) - 3557916..3558122 (-) 207 WP_002114054.1 hypothetical protein -
  RQL83_RS17180 (RQL83_17240) oprC 3558176..3560290 (-) 2115 WP_019768068.1 TonB-dependent copper receptor -
  RQL83_RS17185 (RQL83_17245) - 3560363..3560788 (-) 426 WP_002114087.1 DUF2946 family protein -
  RQL83_RS17190 (RQL83_17250) def 3560832..3561362 (-) 531 WP_002114101.1 peptide deformylase -
  RQL83_RS17195 (RQL83_17255) tsaP 3561485..3562639 (+) 1155 WP_002114134.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RQL83_RS17200 (RQL83_17260) dprA 3562660..3563793 (+) 1134 WP_106389284.1 DNA-processing protein DprA Machinery gene
  RQL83_RS17205 (RQL83_17265) yrdC 3563845..3564414 (+) 570 WP_002114056.1 L-threonylcarbamoyladenylate synthase -
  RQL83_RS17210 (RQL83_17270) - 3564807..3565727 (-) 921 WP_002114137.1 DMT family transporter -
  RQL83_RS17215 (RQL83_17275) - 3565831..3566484 (-) 654 WP_078210243.1 TetR/AcrR family transcriptional regulator -
  RQL83_RS17220 (RQL83_17280) nepI 3566620..3567834 (+) 1215 WP_002114107.1 MFS transporter -
  RQL83_RS17225 (RQL83_17285) yeaM 3567856..3568620 (+) 765 WP_002114047.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 42011.59 Da        Isoelectric Point: 6.6297

>NTDB_id=885714 RQL83_RS17200 WP_106389284.1 3562660..3563793(+) (dprA) [Acinetobacter pittii strain AR3676]
MLTQLYSHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAVQPAELSQWRNLGLHANHLKRVDEFQTAQGQTQFKKLTEQI
QQYTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=885714 RQL83_RS17200 WP_106389284.1 3562660..3563793(+) (dprA) [Acinetobacter pittii strain AR3676]
ATGCTTACTCAACTTTATTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGAATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAACTCAGTTTAAAAAACTAACTGAGCAAATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGTCAGGCACAAGCCCTATTACAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGG
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCGATTATTACTGAGTTTTTGCCTGGGACAC
CTCCACTACAACAGCATTTCCCACGTAGAAACCGAATTGTTAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACTCAGTGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTGTAGTTTCTAGTACCCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.186

100

0.902

  dprA Acinetobacter baumannii strain A118

89.655

100

0.897

  dprA Acinetobacter baylyi ADP1

70.866

100

0.716

  dprA Vibrio cholerae strain A1552

43.516

92.042

0.401